Thermococcus profundus: A3L09_07300
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Entry
A3L09_07300 CDS
T05153
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
tprf
Thermococcus profundus
Brite
KEGG Orthology (KO) [BR:
tprf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tprf03016
]
A3L09_07300
Enzymes [BR:
tprf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
A3L09_07300
Transfer RNA biogenesis [BR:
tprf03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
A3L09_07300
Prokaryotic type
tRNA splicing ligases
A3L09_07300
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ASJ03072
UniProt:
A0A2Z2MED7
LinkDB
All DBs
Position
1353275..1354714
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AA seq
479 aa
AA seq
DB search
MVPLKRIDKIRWEIPKFDRRMRVPGRVYADDALIEKMKNDRTLEQAANVAMLPGIYKYSI
VMPDGHQGYGFPIGGVAAFDAKEGVISPGGVGYDINCGVRLIRTNLTKDEVRPRIRELVD
TLFKNVPSGLGSKGRVRLHWTQLDDVLADGAKWAVDNGYGWKEDLEHLEEGGRMEGANPE
AVSQKAKQRGAPQLGSLGSGNHFLEVQYVDKIYDEKIAKAYGLFEGQVVVMVHTGSRGLG
HQVASDYLRIMEKANRKYGIPWPDRELVSVPFQSEEGQRYFSAMKAAANFAWANRQMITH
WVRESFEEVFKRKAEDMEMEIVYDVAHNIAKLEEHEVDGRKVKVVVHRKGATRAFPAGHP
DVPKAYRDVGQPVLIPGSMGTASYVLAGAEGSMKETFGSSCHGAGRLLSRKAATRQYRGD
RLRNELAQKGIYVRAASLRVVAEEAPGAYKSVDNVVNTVHEAGIANLVARMRPMGVAKG
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atggtaccgctgaagaggatagacaagatccgctgggagataccgaagttcgacaggagg
atgcgcgtccccggaagggtctacgccgacgacgctctaatcgagaagatgaagaacgat
cggacgcttgaacaggcggcgaacgtcgccatgctcccgggcatctacaagtactccatc
gtaatgccggacggacaccagggctacggcttcccaatcggcggagtggcggcctttgac
gcaaaggagggtgtaataagccccggaggagtcggctacgacattaactgcggcgtcaga
ctcatcagaactaacctaaccaaggatgaagtcagaccgaggatcagggagctcgttgat
accctcttcaagaacgtcccaagcggactgggaagcaaaggccgtgtgagactccactgg
acccagcttgatgatgtcctcgccgacggagccaagtgggcagttgacaacggctacggc
tggaaggaagatttggagcaccttgaagagggcggaaggatggagggagcaaatccggaa
gctgtcagccagaaggcgaagcagaggggtgcaccccagctcggctccctcggctcagga
aaccacttccttgaggttcagtatgttgacaagatctacgatgagaagatagccaaggcg
tacggcctctttgagggacaggttgtggtcatggttcacaccggaagcaggggtcttggc
catcaggtcgcgagcgactacctaaggataatggagaaggccaaccggaagtacggaatt
ccctggccggacagggagcttgtgagcgtcccgttccagagcgaggaggggcagagatac
ttcagcgcaatgaaggcagcggcaaacttcgcgtgggccaacaggcagatgataacccac
tgggtcagggagagcttcgaggaggtcttcaagcgtaaagctgaggacatggagatggag
atcgtctacgacgtcgcccacaacatagccaagcttgaggagcacgaggttgatggaagg
aaggtgaaagttgtagtccacaggaagggtgcaacgagggcctttccggcaggccatccg
gacgttccaaaggcctaccgcgacgtcggccagcccgtcctcatcccaggctcaatgggt
accgcaagctacgtcctcgctggagctgagggctcgatgaaggaaaccttcggaagctcc
tgtcacggagctggcaggctgttgagcagaaaagctgccacacggcagtaccgcggcgac
aggctcaggaacgagctggcgcagaagggaatctacgtaagggccgcctcccttcgtgtt
gtcgcagaggaagcccccggtgcctacaagagcgtagacaacgtcgtcaacaccgtccac
gaggcagggatagcgaacctcgttgctagaatgaggccgatgggagttgcgaagggctga
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