Thermococcus profundus: A3L09_08345
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Entry
A3L09_08345 CDS
T05153
Name
(GenBank) single-stranded DNA endonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
tprf
Thermococcus profundus
Pathway
tprf03410
Base excision repair
tprf03430
Mismatch repair
tprf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tprf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
A3L09_08345
03430 Mismatch repair
A3L09_08345
03440 Homologous recombination
A3L09_08345
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tprf03400
]
A3L09_08345
DNA repair and recombination proteins [BR:
tprf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
A3L09_08345
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
A3L09_08345
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
A3L09_08345
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH_CID
DHHA1
DHH
Motif
Other DBs
NCBI-ProteinID:
ASJ03262
UniProt:
A0A2Z2MEV2
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All DBs
Position
1548873..1550300
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AA seq
475 aa
AA seq
DB search
MDKGAFLERAREGAELIKMHIELGHTIRLISHRDADGITAGAIMAKAVAREGGSFQLSIV
KQVSEDLLKELAEERREIYVFSDLGSGSMELIKNYLDFATVVVADHHPPEKDSFSTDSHV
LVNPVPFGANSVRDLSGSGVAYFVAREMNPDNRDMAYIAIVGSVGDMQEIDGTFHGMNLD
IIEDGRKLGILEVRKELRLFGRESRPLRQMLAFATNPELPGITGDERNAIEWLRSKGFDP
DRHYWQLREEEKKKLHDALVLHLIKHGAPKEVIDRLIGDVVISPLYPEGDPRHEAREFAT
LLNATGRLNAGTMGVAICLGDDGAYKKALKMLEDYKREQIEARKFIIQNWSMAEEGEHAY
VFYAGKNIRDTLVGIAANIAINAGLANPEKPVVVLADSDEDENLVKGSARTTEKALKKGY
HLGEALREVAEKLGGEGGGHAIAAGIRFPKGRIDEFIKLFNEALKRQVESENSGD
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
gtggataagggggcctttttggagcgggccagggaaggtgccgagctaataaagatgcac
atcgagctaggccacaccatacgcctgatttcccaccgcgacgcggacggaataacggcc
ggagcgatcatggcaaaggcagtcgcaagggaaggcggaagcttccagctcagcatcgtc
aagcaggtgagcgaggatctcctaaaagagctcgccgaggagaggagagagatctacgtc
ttcagcgacctcgggagcggctcgatggagctcataaagaactatctggactttgcgacg
gttgtggttgccgatcaccacccgcctgagaaggactcgttctccacagattcccacgtt
ctcgtcaaccccgtgcccttcggagccaacagcgtccgcgatctgagcggctctggagtt
gcctacttcgtggccagggaaatgaaccctgacaacagggacatggcttacatagctata
gtcggctccgttggggatatgcaggagatagacggaacgttccacggtatgaacctcgac
atcatagaggacggcagaaaactgggaatcctcgaagtcaggaaggagctgaggctcttc
ggaagggagagccggccgctgaggcagatgctcgccttcgccaccaatccagaactgccc
ggaataaccggggacgagaggaacgcgatagagtggctccgctcgaagggattcgatccg
gacaggcactactggcagctcagggaggaggaaaagaaaaagctccacgatgcgctggtg
ctccatctgataaagcacggggccccgaaggaggtaatcgacaggctcatcggggacgtt
gtgataagtccgctctatcctgaaggggacccaaggcacgaggccagggagttcgccacg
ctgctgaacgccacgggaaggctcaacgcgggcacgatgggcgttgcgatatgcctcggt
gacgatggagcgtacaagaaggccctcaagatgctcgaggactacaagagggagcagata
gaggcgagaaagttcataatccagaactggagcatggcggaggagggggagcacgcctac
gtgttctacgccgggaagaacatcagggacaccctcgtcgggatagcagctaacatcgcg
ataaacgctggacttgcaaaccctgagaagccggtggtcgttctagccgacagcgacgag
gatgagaaccttgtgaagggctccgctcgaaccacggagaaggccctaaagaagggctac
catttgggagaagccctcagggaagtggcagaaaagctcggcggagaaggcggcggacac
gcgatagccgctgggataaggttccccaagggcaggatcgacgagttcataaagctgttc
aacgaggccctcaagagacaggtggagagtgagaacagtggagattga
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integrated database retrieval system
