Salipiger profundus: Ga0080559_TMP1647
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Entry
Ga0080559_TMP1647 CDS
T04656
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
tpro
Salipiger profundus
Brite
KEGG Orthology (KO) [BR:
tpro00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tpro03016
]
Ga0080559_TMP1647
Enzymes [BR:
tpro01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
Ga0080559_TMP1647
Transfer RNA biogenesis [BR:
tpro03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Ga0080559_TMP1647
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNase_H_2
RNase_T
Motif
Other DBs
NCBI-ProteinID:
APX22443
UniProt:
A0A1U7D2V2
LinkDB
All DBs
Position
1141880..1142494
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AA seq
204 aa
AA seq
DB search
MANHLYQGDLPDGLDLGPEVAIDCETMGLNPHRDRLCVVQLSGGDGNAHLVQIARGQTEA
PNLCRLLRDETVLKLFHFGRFDIAAMYNTFGALAAPVYCTKIASRMVRTYTDRHGLKTLT
QELLGVDISKQQQSSDWGAATLSDAQLDYAASDVLHLHRLRTALDAMLAREGRTALAQAC
FDFLPTRSLLDLEGWPDTDIFAHA
NT seq
615 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaccatctctaccagggcgatctgcccgatggcctggacctcggcccggaggtg
gcgatcgactgcgagaccatgggcctcaacccgcaccgcgaccggctctgcgtcgtgcag
ctgtccggcggcgacggaaacgcgcatctcgtgcagatcgcgcgcggccagaccgaagcc
ccgaacctctgccggctgctgcgcgacgaaaccgtgttgaagctcttccacttcggccgt
ttcgacatcgccgccatgtacaacaccttcggtgcgctcgcggcgccggtctactgcacc
aagatcgccagccgcatggtgcgcacctatactgaccgccacggactcaagacactgacc
caggaactgcttggcgtcgacatctcgaagcagcaacagtcgagcgactggggcgcggcc
acgctgagcgacgcgcagctggattacgcggcgtcggacgtgctgcacctgcaccggctg
cgcaccgcgctcgacgcgatgctcgcgcgcgaggggcggaccgcgctggcgcaggcctgc
ttcgacttcctgccgacccgctcgctgctcgatctcgaaggctggcccgacacagacatc
ttcgcgcatgcctga
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