KEGG   Thalassiosira pseudonana: THAPSDRAFT_10025
Entry
THAPSDRAFT_10025  CDS       T01078                                 
Name
(RefSeq) sec13-related protein
  KO
K14004  protein transport protein SEC13
Organism
tps  Thalassiosira pseudonana
Pathway
tps03013  Nucleocytoplasmic transport
tps04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:tps00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    THAPSDRAFT_10025
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    THAPSDRAFT_10025
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tps03019]
    THAPSDRAFT_10025
   04131 Membrane trafficking [BR:tps04131]
    THAPSDRAFT_10025
Messenger RNA biogenesis [BR:tps03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     THAPSDRAFT_10025
Membrane trafficking [BR:tps04131]
 Protein recycling
  Rab GTPases and associated proteins
   Rab11 associated proteins
    THAPSDRAFT_10025
 Endoplasmic reticulum (ER) - Golgi transport
  Forward pathways
   Coat protein complex II (COP-II)
    THAPSDRAFT_10025
 Autophagy
  Other autophagy associated proteins
   SEACAT/GATOR2 complex
    THAPSDRAFT_10025
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 WD40_WDHD1_1st Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_RIG_2nd ANAPC4_WD40 Beta-prop_IFT140_1st Beta-prop_WDR19_1st Beta-prop_EIPR1 Kelch_6
Other DBs
NCBI-GeneID: 7441860
NCBI-ProteinID: XP_002294025
JGI: 10025
UniProt: B8CCZ8
LinkDB
Position
15:39976..41237
AA seq 304 aa
MVHDAQLDYYGTKLATSSSDRTVKIYDISGNNYHPNATLTGHSGPIYQLSWSHPKYSSSL
ASASFDGSVLIHRESRPGEWILVKAFVGLHDSSVNTVSFGPHEYGLVCAAGSSDGRVSVL
THGSDDSWTVEYLEDTGLGVNAVSWAPYAVGSDGDDGAVVPMPPRLVTGGSDNGIRVWSK
NPTTGTWEQEPFENVSPGIAHKDWVRDVAWAPNVIPGMSIVASCSEDGSVIIWKQGGDNS
EGGSDGKWTPTVLHTFNDPVWRLSWSIAGNILAVSSGDSNVTLWKEGLDGGWSQVSQVED
VAAE
NT seq 915 nt   +upstreamnt  +downstreamnt
atggttcacgatgctcagttggattattatgggactaaattggctacttcttcttccgat
cgcaccgtcaaaatctacgacatctccggaaacaactaccatcccaacgccaccctcacc
ggccactccggacccatctaccaactctcctggtctcaccccaaatactcatcctcgctc
gcctctgcctccttcgacggatctgttctcatccatcgtgaatctcgtcctggtgaatgg
attttggtaaaggcgtttgtgggacttcatgatagttctgtgaatactgtatcgtttggt
cctcatgagtatggattggtgtgtgctgcgggaagtagtgatgggagggtgagcgtgttg
actcatgggagtgatgattcgtggactgtggagtatttggaggatacgggtttgggtgtc
aatgcggttagttgggctccgtatgcggtggggagtgacggagatgatggtgctgttgta
cccatgccaccgaggcttgttaccggaggatcggacaatggtattcgagtttggagtaag
aatcccaccactggaacgtgggagcaggagccatttgagaatgtatcccccggtatcgca
cacaaggattgggtacgtgatgtcgcatgggctcccaatgtcattcctggaatgagtatc
gtggcaagttgctcagaggatggaagtgtcattatctggaagcaggggggagacaatagt
gaaggtgggagtgatggcaagtggactcccacggtgcttcatacgttcaacgatcctgtc
tggagacttagctggagtattgcggggaatattttggcggtgagcagtggagattcgaat
gtgacgctttggaaggaggggttggatggggggtggagtcaggttagtcaggtggaggat
gtggctgctgagtga

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