KEGG   Thalassiosira pseudonana: THAPSDRAFT_10683
Entry
THAPSDRAFT_10683  CDS       T01078                                 
Name
(RefSeq) predicted protein
  KO
K12626  U6 snRNA-associated Sm-like protein LSm7
Organism
tps  Thalassiosira pseudonana
Pathway
tps03018  RNA degradation
tps03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tps00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    THAPSDRAFT_10683
  09123 Folding, sorting and degradation
   03018 RNA degradation
    THAPSDRAFT_10683
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tps03019]
    THAPSDRAFT_10683
   03041 Spliceosome [BR:tps03041]
    THAPSDRAFT_10683
Messenger RNA biogenesis [BR:tps03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     THAPSDRAFT_10683
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     THAPSDRAFT_10683
Spliceosome [BR:tps03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    THAPSDRAFT_10683
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 7442126
NCBI-ProteinID: XP_002294392
JGI: 10683
UniProt: B8CE82
LinkDB
Position
17:411984..412806
AA seq 131 aa
MSTETKGRGGGRGGGGRGGGGGGRGGAGNSKKESILELAKLVDSSVRVKCLGGRELRGAL
RGYDELVNLVLDDCEEFMRDPEDPETITNQTRKLGLVVIRGTQVSLVSPEEGTEEIANPF
LGGGEEEEEEG
NT seq 396 nt   +upstreamnt  +downstreamnt
atgagcacagaaaccaaaggcagaggaggcggacgaggcggaggtggccgcggtggcggt
ggaggaggacgcggaggcgccggtaatagcaagaaggagtcaattttggagcttgccaag
ctcgtcgactccagcgtccgtgtcaaatgtctcggcggacgtgaactgcgaggagccctc
cgtggatacgacgagcttgttaatttagtgttggatgattgtgaggagtttatgagagat
ccagaagatcccgaaacaatcacaaaccaaacacggaaactgggcctcgtagtcattcgt
ggcacacaagtcagtctggtctctcctgaggaagggacggaggagattgccaatccgttt
ttgggtgggggtgaggaggaagaggaggagggttga

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