Thalassiosira pseudonana: THAPSDRAFT_11949
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Entry
THAPSDRAFT_11949 CDS
T01078
Name
(RefSeq) predicted protein
KO
K14766
nucleolar protein 14
Organism
tps
Thalassiosira pseudonana
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tps03009
]
THAPSDRAFT_11949
Ribosome biogenesis [BR:
tps03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
THAPSDRAFT_11949
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nop14
PTM_DIR17_Tudor
Tudor_5
Motif
Other DBs
NCBI-GeneID:
7449447
NCBI-ProteinID:
XP_002295105
JGI:
11949
UniProt:
B8CG12
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Position
22:complement(986798..990683)
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AA seq
1131 aa
AA seq
DB search
MGKSGRSKNKVKRSSKTLPKGIPTRKSTPGNNTTSGPSPFEYARTTNSATRVKHHVHNRI
VPGQLKPNSLGRGGASNARSTQSSLARSIQRRQTHLKSQLQSEGKANSFIDRRIGEAGRR
HGLVEDGGGGRTKEDVMLKRIVQERVRRSKRAGKFSLEEEEDDGGGGGGLTHRVGIVMVY
CILSLFMFSTLQCTNHTNHDSAQRLPQGKTIDESYTGKPQDEMDIILSDDDQDDLDKVDT
MMHFGGGKFDKDNAIERGAYGGEGGQGGQDLGVAYRSRKEELEDRIRMKKFEKAERMKRK
EDQAETFETMDESFAELAQLLQFRDKEQERTEKAKARKMGTLNADDVEMDAWDKEMKEYL
FERKVKATDRTKTPEEIAKEEADRLHKLETRRLARMAGDFEEDDLSDISDDEGGRKRKRS
KKEQSKKKRDHSNPEELSDSEDEKEESGDRREVRFTADGLVYLDKDGNVVGKVGEEKDEE
NDAISEEESDGSDGDLSGSEEEDSAAGHDLGDSVDEASAANSDEDGSDEESGANPVELTK
GMKVQGNYRAKEQYGGKENWYNGEITAVRKDCNGNTVYDVTYEDGDFEDGMIQSNVRALP
KSQEEKEAEMARETEVSLAKKKKLKAKIRAKETIPFVFEVPTTLDSLHNVIATHASTGAD
ASLIIQRIHTTNSVRLNHKNKERMQNFYDVLLRRFIAVGDAIFESGNGGPDLERYEQLNS
ITKTLYAMSQDSPECAGAVWSRRLGIFQKAFAKRLRDVEVVQLGDACEGEFTAWPSTGML
LLMRALPHIFPSTDKRHAVVTPALVLLGQILAQTPIYSQYDVVMGLFCSGLMIEYTKDAK
RLPPEATAFLAGVLRLFADDVAAALSRSPLPSLGSTSKGSTLLNLRKELSDLINEGDLGL
NNIRLSLEKDDIQSEANSLSTISFALHLVQQAINAFGKTEEGSEREIFSEVMKAMLCIDG
SRKDLTLPLSVKNAIAETARVASSTCASGEERRPLQRRKAASAKDLAIKTLAPRMEDPSR
YSMSKDKGKTQLQAEHDRHRREYKREHKAAMRELRLDSAFIESERRKAKDAADGKAKEKR
HKNFAWLEQEQATMNQQVRMGGGLLSGGGVGAAKRKAKSGKLGIKKGGKLR
NT seq
3396 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaatcaggcagatcaaagaacaaagtcaaacgttcctccaaaacactccccaaa
ggcattcccacccggaaatccacccctggcaacaacactacttcaggcccatccccattt
gaatatgcacgtaccaccaactcagccactcgcgtcaaacaccacgttcacaatcgcatc
gttcccgggcaactcaagccaaactccctcgggagaggaggagcatccaatgcaagatcc
acacagtcatcactagcacgctccatccaacgtcgtcaaacacatcttaaatctcaactt
caaagtgaggggaaggccaattcgttcattgatcggaggattggtgaagcgggacgacgt
catggattagtggaggacggaggtggggggagaacgaaggaggatgtcatgttgaagaga
attgtgcaggagagggtgaggaggagtaagagggcgggaaagtttagtttggaggaggag
gaggatgatggtggtggtggtggcggattgactcatcgggtgggtattgtgatggtgtac
tgtattttgtctttgttcatgttctcaacactccaatgtactaatcacaccaatcacgac
tctgcgcaacgcctccctcagggcaaaacaatcgacgaatcctacacaggcaaaccccaa
gacgaaatggacataatcctctccgacgacgaccaagacgatctagacaaggtagacacc
atgatgcactttggtggaggaaagtttgacaaggataacgccattgagcgtggtgcgtat
gggggtgaaggaggacagggagggcaggatttgggagtggcgtatcgtagtcggaaggaa
gagttggaggatcgtattcggatgaaaaagtttgagaaggcggagaggatgaagaggaag
gaagaccaagccgaaacatttgaaacaatggacgagtcctttgctgaactagcacaactc
ttgcagttccgcgacaaggagcaagaacgtactgaaaaggccaaggctaggaagatggga
acgttgaatgcggatgatgtggagatggatgcttgggataaggagatgaaggaatacctc
tttgaacgcaaagtcaaagctaccgatcgtaccaaaactcccgaagaaatcgccaaagaa
gaagcagacagattgcacaaactcgaaacgcgacgtctggcaagaatggctggtgatttt
gaagaagatgatttgtccgacatttcagatgatgagggcggcagaaaaaggaaacggagt
aagaaggagcagagtaagaagaagagagaccattccaatcccgaggagttgagtgattca
gaagatgaaaaggaggaatcgggggatcgtagggaggtccggtttactgctgatgggctt
gtgtatcttgataaggatgggaatgtggtcggcaaagtgggtgaagagaaggatgaagag
aatgacgccatctctgaggaagagagcgatggttccgatggcgatttgtctggatcggag
gaagaagatagtgcggcaggtcacgatctcggtgattcagtcgatgaggcttcggcagcc
aacagtgacgaggacggtagcgatgaagaatcaggtgcaaaccccgtggagctaaccaag
ggaatgaaagtacaagggaactaccgtgccaaagagcagtacggcggaaaggagaactgg
tacaatggagaaatcactgccgttagaaaggattgcaatggaaataccgtttacgatgtc
acgtacgaggatggagattttgaagacggaatgatccaatccaatgtgagggcgctgcct
aaatctcaggaagagaaggaagcagagatggcaagagagactgaggtatcattggccaag
aagaagaaactgaaggccaaaatcagagccaaagagaccatcccatttgtgtttgaggtt
ccgactacgctagattctctccacaacgtaatcgctacgcacgcatctaccggcgccgac
gcctctctcatcattcaacgaattcatactaccaactctgttcgtctcaaccataagaac
aaagaacggatgcaaaacttttacgacgtacttcttagacgttttatagctgtcggtgat
gcgattttcgagtctggcaacggtggaccagatcttgaacgatacgagcaactgaactcc
atcaccaaaacactctatgcaatgtcacaagactcgcctgaatgtgctggggccgtttgg
agtcgccgattgggtatctttcagaaagcatttgcaaagcgtttacgtgacgttgaggtc
gttcaattgggagatgcttgcgaaggtgaattcactgcatggccatccacgggaatgctg
ctgctcatgagggcactgccacacattttcccatccacagataaacggcatgctgtagtg
actcccgctcttgtcttattggggcagattctcgctcaaactccaatctatagccagtat
gacgtcgttatgggattgttctgctcgggattgatgattgagtataccaaagatgccaaa
cgtttgccaccagaagcgactgcattcctagctggcgtcttgcggttgtttgcagatgat
gtagctgctgccctatcacgcagccctcttccaagtcttggctcgacatctaaaggcagc
actctattgaatctcaggaaagagcttagtgatttgataaacgaaggcgacttgggtttg
aacaacattcggctctcgcttgaaaaggacgacatccaatctgaagcaaattcattgtca
acaatatccttcgctctccatttggtacagcaggctattaacgcgtttgggaagactgaa
gaggggtctgagagggagatattctccgaagtgatgaaagcgatgctttgcattgatggt
tcaaggaaagatcttactctcccattgtccgttaagaacgctatcgccgaaactgcacgt
gtagcatcaagcacttgtgcttctggagaggaaagacgacctctccagcgtcgtaaagct
gcatctgccaaagatcttgcgatcaagactcttgctccgaggatggaggatccatcgagg
tacagcatgtctaaagataagggcaagactcaactgcaagctgagcacgatcggcacagg
cgcgagtacaaacgggagcataaggctgcaatgcgtgaacttcgtttggatagtgcattc
atcgagagtgagagacgaaaggctaaggatgctgctgatgggaaggccaaggagaaacgt
cacaagaactttgcatggctggagcaagaacaggctaccatgaatcaacaggtacgaatg
ggtggaggcttgctttctgggggaggagtgggtgctgcaaagcgaaaagcaaagagcgga
aagttgggaattaaaaagggaggcaagcttaggtag
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