Thalassiosira pseudonana: THAPSDRAFT_12035
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Entry
THAPSDRAFT_12035 CDS
T01078
Name
(RefSeq) predicted protein
KO
K08493
vesicle transport through interaction with t-SNAREs 1
Organism
tps
Thalassiosira pseudonana
Pathway
tps04130
SNARE interactions in vesicular transport
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04130 SNARE interactions in vesicular transport
THAPSDRAFT_12035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tps04131
]
THAPSDRAFT_12035
Membrane trafficking [BR:
tps04131
]
SNARE
SNAP-25[N] (Qb)
Vti1
THAPSDRAFT_12035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
V-SNARE
V-SNARE_C
Motif
Other DBs
NCBI-GeneID:
7448876
NCBI-ProteinID:
XP_002295151
JGI:
12035
UniProt:
B8CG98
LinkDB
All DBs
Position
23:209939..210882
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AA seq
214 aa
AA seq
DB search
MSSSIPFERYDEEFLSLTEQVTSKLRSLDPSTSSGLPPTAEADIKMAHNLLLQADDLLKQ
MGLEARGVDDAGVKRDLLGKVRVCKTRLANLRDDYEAAKSNVERNSLGLNSDIESGGRNS
RGRSSGSKERLLSNTDALQSQSETLANARSIMAETEGVAMEITEELGRHRETITSAHGRG
KEDSAEYGEEGGAAEVDFVWCRGDGGGGVFVFSL
NT seq
645 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcctccatcccctttgaacgatacgatgaagaattcctctccctcaccgaacaa
gtcacttccaaactgcgctctctcgatccgtccacctcctctggcctgccgcctactgcc
gaggcggatatcaaaatggcacacaatttgctacttcaggcggatgatttattgaagcaa
atgggcttagaggcgagaggggtggatgatgcgggtgtcaagagggacttgttggggaag
gtccgagtatgcaaaacacgcctagccaatctcagagacgactacgaagcagccaaatca
aacgtggaacgaaactctttgggtctcaactccgacattgaatccggaggtagaaactca
cgagggcgaagcagcggttccaaagaacgtctcctgtccaacactgatgccctacaatcc
caatctgaaaccctagcaaatgcacgaagcatcatggccgagaccgaaggagtagccatg
gaaatcaccgaagagttgggaagacatcgtgaaacaatcaccagtgcccatggaagaggc
aaggaggatagtgcagagtatggggaggagggaggtgcagcagaagttgattttgtatgg
tgtcggggggacggtggcggtggtgtttttgtttttagtttatag
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