Thalassiosira pseudonana: THAPSDRAFT_12403
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Entry
THAPSDRAFT_12403 CDS
T01078
Name
(RefSeq) atpase-like protein
KO
K11654
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-]
Organism
tps
Thalassiosira pseudonana
Pathway
tps03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
THAPSDRAFT_12403
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tps03021
]
THAPSDRAFT_12403
03036 Chromosome and associated proteins [BR:
tps03036
]
THAPSDRAFT_12403
Transcription machinery [BR:
tps03021
]
Eukaryotic type
RNA polymerase I system
Other transcription-related factors
NoRC (nucleolar remodeling complex)
THAPSDRAFT_12403
Chromosome and associated proteins [BR:
tps03036
]
Eukaryotic type
Chromatin remodeling factors
CHRAC complex
THAPSDRAFT_12403
RSF complex
THAPSDRAFT_12403
WICH complex
THAPSDRAFT_12403
B-WICH complex
THAPSDRAFT_12403
NORC complex
THAPSDRAFT_12403
BRF complex
THAPSDRAFT_12403
NuRF complex (fruit fly)
THAPSDRAFT_12403
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
SLIDE
Helicase_C
ResIII
HDA2-3
DEAD
HAND
AAA_22
MobB
Motif
Other DBs
NCBI-GeneID:
7444880
NCBI-ProteinID:
XP_002290410
JGI:
12403
UniProt:
B8C3Q3
LinkDB
All DBs
Position
5:1921291..1924350
Genome browser
AA seq
873 aa
AA seq
DB search
MHPYQLEGLNWMIKLHDHGINGILADEMGLGKTLQTISLLAYLREARGVKGPHIVIVPKS
VVGNWIKEFRKWCPSIKAIRMGGTKEERQKAVKNDLVPDATGKYNFDALVCSYEAVLKEK
SALGKIPWRYLIIDEAHRIKNENSSLSQAVRLLNTGFRLLITGTPLQNNLHELWALLNFL
LPEVFGDAEQFDEWFSMSGKEGQENVIKKLHTVLRPFMMRRVKKDVACGLPPKKETKLFI
GLTEMQQDWYKRVLRKDAHELNALGGPSHARLQNVLMHLRKVCNHPYLFDGAEQGPPFSD
GPHLWENSGKMQLLNKLLPKLKAKGSRVLIFSQMTRVLDIMEDYLRLVGHEYCRIDGNTD
GEKRDSQMEEFNAPGSSKFCFLLSTRAGGLGINLATADIVILFDSDWNPQVDLQAMDRAH
RIGQTKPVQVFRFISEGTVEEKIIERADKKLFLDAAVIQQGRLAEQNTKLSKSELMQMVK
FGADQIISGKKGTYTDEDIDALIAKGEKRTEDMQAQLQTDAQHNLASFTLSGDMETSTKD
TFDFAGENYRDKKKGDNVFIDMGTRERKRAVYDVNEYFRETMNTGDSSGMKAHAADAKAR
KKRKGLYAQDFQLYNRDRLEELAARERELAQSKEDHLGQIMEEIAEMEKMLDQFVLTQPE
QAEREQLLSEGFADWNRKDFKCFCNALEKHGRYNLATIIEEIMQETGKADGDIKRYYVAF
WLHYRRLTDWNKIIDKIEKGERKIIRLREIKDIIQEKVLEQHSPWDLLTYSWPIMQFKYG
PGNRGFSYRQEEDAFLLTMMHRHGYGAARRIQLEIRRAWQFRFNWFFKSRSPQEIQKRCD
LLIKVVEREMEEFRKEEELEEQKKEELALKEAA
NT seq
2619 nt
NT seq
+upstream
nt +downstream
nt
atgcatccgtatcagttggaaggattgaattggatgatcaagttgcatgatcatggtatc
aatggtattttggcggacgagatggggttaggaaagactcttcaaaccatctctttgttg
gcgtatcttcgtgaggctaggggagttaagggaccgcatattgtcattgtgcctaaatca
gttgtggggaattggatcaaggagtttcgcaagtggtgtccatctatcaaagccattcgt
atgggaggaaccaaggaggagcggcaaaaggctgtgaagaatgatttggtgcccgatgca
acggggaaatacaactttgatgcgttggtgtgttcgtatgaggctgtgttgaaggaaaag
tcggcattgggaaaaattccatggcgttatctcattattgacgaggctcaccgtatcaaa
aatgagaattcttccttgagtcaggcagttcgtctattgaatactggttttcgtctcttg
attactgggactccccttcaaaacaatctgcacgagctttgggcacttctcaactttctc
cttccagaggtctttggagacgctgaacagttcgacgagtggttttccatgagtggaaag
gaagggcaagagaatgtgattaaaaagttgcacaccgtgcttcgtcctttcatgatgagg
cgcgtgaagaaggatgttgcgtgtgggttgcctcctaagaaggaaaccaaactatttatt
ggcttgacggagatgcagcaagattggtacaaacgagtgctgcgaaaggatgctcatgaa
ctcaatgctttgggtggaccgagtcatgctcgtcttcagaacgtattgatgcaccttcgt
aaggtctgcaaccacccctatctctttgacggagcagagcagggacctccctttagtgat
ggacctcatctttgggagaacagtggaaagatgcaacttttgaacaaactccttccaaag
ttgaaagccaaaggctctcgtgtgctcatcttttctcaaatgactcgagttcttgatatt
atggaggattatcttcgtcttgttggacatgagtactgccgtattgatggaaacactgac
ggtgaaaagcgtgactcgcagatggaggaattcaacgctcctggatcgtccaagttttgc
tttttgctcagtacccgagcaggtggactaggaatcaaccttgcaacggctgatattgtc
attctctttgacagcgattggaatccccaagtcgatttgcaagcaatggaccgtgctcat
aggatcggccaaactaagcctgtgcaggtgttccgttttatttcagagggcacagtggaa
gagaagataattgaacgagctgataagaagttgtttttggatgcagctgtgatacagcag
ggacgattggccgagcaaaataccaagttgagcaagagcgagttaatgcaaatggtcaaa
tttggagctgatcaaattatttctggtaaaaaagggacgtataccgacgaggatattgat
gcgttgatcgccaagggagagaagaggaccgaggatatgcaggcacagttgcagactgat
gcacaacacaatcttgcctcattcacgttgtctggcgacatggaaacgtccaccaaagac
acgtttgatttcgctggtgagaactatcgtgataagaagaagggagacaacgtgttcatc
gacatgggtactcgtgagaggaagcgtgctgtctacgacgtcaatgagtacttccgcgaa
acaatgaacactggtgactcgagtggaatgaaggctcatgccgcagacgccaaggctcgt
aagaagcgtaagggattgtacgcacaggatttccagctttacaatagggatcgtttggaa
gagcttgcagcccgcgagagggagctagctcagtctaaagaggatcatttgggtcagatt
atggaggagattgccgagatggagaagatgcttgatcagtttgtcttgactcaacccgag
caggctgagagggagcagttgttgtcggagggatttgctgattggaataggaaggacttc
aagtgtttctgcaacgctttggagaagcatggacgttacaacctcgctactatcatcgaa
gagatcatgcaggagactggaaaggccgacggtgatatcaagagatactacgttgccttt
tggcttcactatcgacgtcttacagactggaacaagatcattgacaagattgaaaaggga
gagcgaaagatcattcgtctgcgcgagatcaaggatattatccaagagaaggtccttgaa
cagcactccccttgggatcttctcacctactcctggcctatcatgcagttcaagtacggt
cccggcaatcgtggtttcagctatcgtcaagaggaggatgcatttttgcttaccatgatg
caccgccatggatacggtgccgctcgtaggattcaattggagattcgtcgcgcttggcag
tttcgtttcaattggttcttcaagtctcgcagtccacaggagattcagaagaggtgtgat
ctgctcatcaaagtggtagaacgggagatggaagaatttcgcaaggaggaagagctcgag
gagcagaagaaggaggaattggcattgaaggaggcagcc
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