Thalassiosira pseudonana: THAPSDRAFT_13224
Help
Entry
THAPSDRAFT_13224 CDS
T01078
Symbol
pabA
Name
(RefSeq) polyadenlyte binding protein
KO
K13126
polyadenylate-binding protein
Organism
tps
Thalassiosira pseudonana
Pathway
tps03015
mRNA surveillance pathway
tps03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
THAPSDRAFT_13224 (pabA)
09123 Folding, sorting and degradation
03018 RNA degradation
THAPSDRAFT_13224 (pabA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tps03019
]
THAPSDRAFT_13224 (pabA)
03041 Spliceosome [BR:
tps03041
]
THAPSDRAFT_13224 (pabA)
Messenger RNA biogenesis [BR:
tps03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
THAPSDRAFT_13224 (pabA)
mRNA cycle factors
Stress granule specific factors
THAPSDRAFT_13224 (pabA)
Spliceosome [BR:
tps03041
]
Complex C
Other components
Complex C specific factors
THAPSDRAFT_13224 (pabA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_Nup35
RRM_7
RRM_MARF1
DUF7373
PABC_AtC3H46
Motif
Other DBs
NCBI-GeneID:
7443930
NCBI-ProteinID:
XP_002294914
JGI:
13224
UniProt:
B8CFU7
LinkDB
All DBs
Position
22:<744429..>746632
Genome browser
AA seq
612 aa
AA seq
DB search
QQSANFSSASLYIGDLLPEVNEGFLFEIFNAVGPVASIRVCRDAVTRRSLGYAYVNYHQV
ADAERALDSMNFTEIKGKPCRIMWSQRDPSMRRSGVGNIFVKNLHEGIDNKQLYDTFSLF
GNILSCKVVTDKATGLSKGYGYVHYETNEAAASAIEKLDGMLIDGKEVQVGVFMRRDNRP
GQADWTNVFIKNIPFEWTEDKLREEFEGFGEVVSAKPKEVQGSLGFGFVNFATHEAAAAA
VKEMNDKEFTVTEDGEEVTKVLFVGRAQKKAERERELRAKYEAEKIDRIAKFQGVNLYVK
NLDDTVTDDVLRDEFSAMGTITSARVMKDLKTGISRGFGFVCYSTPEDATRAVNEMNGKI
ILGKPIFVALAQRRDVRRAQLEAQHNQGRGNLPGPMGGAYPGAVPMPGMYRPGPGMQPAY
PVPQMMQGRGGYGMQAQPGGRGGYGMMPGYGMMQPGRGAVPGRGGRGPVPPGRGGRGPMP
GRGPGQQPIKFNQQLASSSSHFLLPLYVSSQARNAGGPPQGMPQQPPAGAPQQPPAPAAN
EQLTPAALASASPEVQKNMIGERLYPLIHQTQPELAGKITGMLLEMDNSELLHLLESPEA
LNAKIQEALQVL
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
caacaatccgccaacttctcctccgcctccctctacatcggcgatctcctccccgaagtc
aacgaaggattcctctttgaaatcttcaacgccgtcggcccagtcgcctccatccgcgtc
tgtcgcgatgccgtcacccgtcgttcattgggctatgcctacgtcaactaccatcaggtt
gcggatgcggagagggcactggattcgatgaacttcaccgagatcaaggggaagccgtgc
aggattatgtggagtcagagggatcccagtatgaggaggagcggagtgggcaatatcttt
gtcaagaacttgcatgaggggattgataacaagcagttgtatgatacgtttagcttgttt
ggaaacatcttgagttgcaaggtggtaaccgacaaggccaccgggttgagcaaggggtac
ggatacgtccactacgaaaccaacgaggcagctgccagtgccattgaaaaattggacggc
atgttgatcgacggcaaggaagttcaagtgggtgtcttcatgaggagggacaaccgaccc
ggtcaggccgattggaccaatgtctttattaagaacattccatttgaatggacggaggac
aagttgagggaggagtttgagggattcggtgaggttgtgagtgcgaaaccaaaagaagtc
caaggctctctaggattcggattcgtcaattttgccacccacgaagccgccgccgcagcc
gtcaaagaaatgaacgacaaagaattcaccgtcactgaagacggagaagaagtcaccaaa
gtactattcgtgggtcgtgcccaaaagaaggcagagcgtgaacgtgagcttcgtgccaag
tatgaggctgagaagattgatcgtattgccaagtttcagggtgttaacctctacgtcaag
aatttggatgatactgtcaccgatgatgttttgagggatgaattctctgccatgggaact
atcactagtgcacgtgtcatgaaggatctcaagacgggtatctctcgaggattcggattc
gtatgctactctactcccgaggatgccactcgtgccgtaaatgaaatgaatggcaagatt
atcttgggcaaacccatctttgtcgcattggctcaaagaagggacgttcgcagggctcag
ttggaagctcagcacaaccagggacgtggaaatctaccgggaccaatgggcggagcctat
cccggtgccgtgcccatgcctggcatgtaccgtcctggacctggaatgcagcctgcctat
cctgtgcctcagatgatgcaaggacgcggtgggtatggaatgcaagcacaacctggagga
cgtggtggatatggtatgatgcctgggtatggaatgatgcagcctggaaggggggctgtt
ccgggacgtggtggacggggacctgttcctcctggacgtggtggaaggggacctatgcct
ggaaggggtcctggtcagcagcctattaaattcaatcagcaattagcatcatcatcatct
cactttctcctgcccctgtacgtttcttcacaggctcgtaacgcaggtggacctcctcaa
ggcatgcctcagcagcctcccgccggagctcctcagcaaccgcctgctcccgcagccaac
gagcaactcactcctgctgctctcgccagtgcctctcccgaagttcaaaagaacatgatc
ggagagcgcttgtaccccctcattcatcagactcagcctgaactcgcgggtaaaatcacc
ggtatgcttttggagatggataactcggagcttctccatttgcttgagagtcctgaggct
ttgaatgccaagattcaggaggcgttacaggtgttg
DBGET
integrated database retrieval system
