KEGG   Thalassiosira pseudonana: THAPSDRAFT_13794
Entry
THAPSDRAFT_13794  CDS       T01078                                 
Name
(RefSeq) pre-mrna splicing factor splicing factor hprp17-like protein
  KO
K12816  pre-mRNA-processing factor 17
Organism
tps  Thalassiosira pseudonana
Pathway
tps03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tps00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    THAPSDRAFT_13794
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:tps03041]
    THAPSDRAFT_13794
Spliceosome [BR:tps03041]
 Complex C
  Other components
   Step II factors
    THAPSDRAFT_13794
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz WDR55 EIF3I Beta-prop_EML_2 Beta-prop_TEP1_2nd Beta-prop_RIG_2nd Beta-prop_EML Beta-prop_CAF1B_HIR1 Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 WD40_MABP1-WDR62_2nd WD40_RFWD3 Beta-prop_WDR75_1st Beta-prop_IFT122_1st Beta-prop_IFT140_1st Beta-prop_EIPR1 Beta-prop_TEP1_C Beta-prop_SPT8 Beta-prop_DCAF4 NBCH_WD40 WDR90_beta-prop_4th WD40_MABP1-WDR62_1st eIF2A Beta-prop_NWD2_C PQQ WD_LRWD1 PQQ_3 Beta-prop_Nup120_160 PQQ_2 Beta-prop_WDR75_2nd KNTC1_N Nairovirus_GP38
Other DBs
NCBI-GeneID: 7442046
NCBI-ProteinID: XP_002289605
JGI: 13794
UniProt: B8C0X9
LinkDB
Position
4:complement(177583..178626)
AA seq 348 aa
ENPQAVEATTTFHGGELVDYRGRSWMEPPSGVKGVDLYDMDDHACYVPKKCVARFSGHKK
GVHRIRLFPRTGHLLLSCGLDGECKVWSVEQKKVMRTYCGHTAAVRDVQFNNDGSRFVSA
SFDRYLRVWDTESGEVVGTYTNRRVPYVVKFYPNDDNIFVVGCSDNKIVAYDSTTGEITQ
EYDHHLAPVNTITFVEDNGTKMVTSSDDKKVLVWEWDIGVPIKYISDPTMHSMPVITMHP
SEKYLLAQSLDNRIVVYQAGDRYALQRKKKFEGHNVAGYACDIACSPDGRFVCCGDSDGK
LFFWDFKKTKMLQKFKAHDKGPSIGAVWHPVDPSVVFTCGWDGVIKMW
NT seq 1044 nt   +upstreamnt  +downstreamnt
gagaaccctcaggccgtggaggcgactacgacatttcacgggggggaattggtggattac
cgtggtcgatcgtggatggaacctccctcgggagtcaagggggtggatctttacgatatg
gacgatcatgcatgctatgttccgaaaaagtgtgtggcgagattttcaggccataagaag
ggggtgcatcgtattcgtctctttcctcgtacggggcatttgttactcagttgtggattg
gatggggagtgtaaggtgtggtcggtggagcaaaagaaggttatgaggacgtattgtggg
cataccgccgctgtgagagatgttcaattcaataacgatgggagtcggtttgtctcagcg
tcgttcgatcggtatttgagagtgtgggatacagaatccggcgaggtggtgggaacctat
accaatcgtcgtgtaccgtatgttgtcaagttttatccaaatgatgacaacatctttgtt
gtgggatgttcggataataagattgtggcgtatgattcgacaactggggagataacgcag
gagtatgatcatcatttggcacctgtgaatacaatcacgtttgtggaggataatggtacc
aagatggtgacgtcgagtgatgataagaaggtattggtttgggagtgggatattggagtt
ccaatcaagtacatttcggatcctacgatgcattccatgccggtgattacgatgcatcct
agtgagaagtatcttcttgcacagagtttggacaatcgcattgtggtgtatcaagcaggc
gatcgatacgcattgcagaggaagaagaagttcgaagggcacaatgtagcaggatacgca
tgcgacattgcgtgcagtccagatggacgatttgtatgctgtggagatagcgatggaaag
ctcttcttttgggatttcaagaagacaaagatgttgcagaagttcaaggcacatgataag
ggaccgagtattggggctgtttggcatccggtggatccttcggtggtgtttacttgtggt
tgggatggagttatcaagatgtgg

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