Thalassiosira pseudonana: THAPSDRAFT_1393
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Entry
THAPSDRAFT_1393 CDS
T01078
Symbol
CAP1
Name
(RefSeq) chromosomal protein,like chromosomal protein xcap-e
KO
K06674
structural maintenance of chromosome 2
Organism
tps
Thalassiosira pseudonana
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tps03036
]
THAPSDRAFT_1393 (CAP1)
Chromosome and associated proteins [BR:
tps03036
]
Eukaryotic type
Chromosome condensation proteins
Condensin I
THAPSDRAFT_1393 (CAP1)
Condensin II
THAPSDRAFT_1393 (CAP1)
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
SMC_N
SMC_hinge
AAA_21
AAA_29
AAA_23
RHS_N
ABC_tran
Motif
Other DBs
NCBI-GeneID:
7451465
NCBI-ProteinID:
XP_002286201
JGI:
1393
UniProt:
B8BQT7
LinkDB
All DBs
Position
1:<1392750..>1396924
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AA seq
1217 aa
AA seq
DB search
MHIKEIVVDGFKSYAHRTVIAGFDPHFNAITGLNGSGKSNILDSICFVLGITNLSQVRAG
NLSELVYKQGQAGVNKASVTIVFDNEDESSSPVGYEQCKEVNVTRQVLIGGKSKYLINGR
NSPAGQVANLFHSVQLNVNNPHFLIMQGRITKVLNMKPDEILGMVEEAAGTRMYENKKNT
AIKTIEKKQMKVDEINSILSEEITPTLERLRGEKQQYLKWSKNNADIERIERFVVASEYM
SAQETLSKNSEDVAQMEEVVAMHEETMRVAREEVEAKEGEMAKLSEQMNSELESSHNEAK
AEEEKRSKDLVKATSALENKKSAVATATKELHEAQSYVSESKNAITQMQSNISKELDSIQ
KAKDEALSAEATLERLNKEYQNMCAGISSEEGEEGRTLPEQISKAYSDANNAEARSKQAG
MKIEHLAKSLKSVEKDMKKEEASASKLSKKRDVTMEKVEGLRAEISKTDFSETEFNALET
EKIDLENSVSGLQEKVDTLSAQLEGRLAFNYSDPVRGFDRSKVKGLVARLINVKLPKHST
ALEVVAGGKLYQVVVDEAITGKALLNNGKLQRRVTIIPLDKVVPRNMTSSTVGTASDMAK
RQQTTAQPAIELVGFDEEVRTAIEYVFGSTLVVDGMKAANSICDATKTRTVTLDGDVYEP
SGLISGGSKDNLGSTLGRITELSAATAELKEKSARLRTVVNKLESMSAQSKQFDKLSGDL
EIASSELAGIDKHISQTSYGMLKDKFDAMTKEVADANEEVETMKKTKEEKWELYNELKEK
EAQLTLDRENRLKDVEAQVKKAKENVVAKENAAREAEVKSQEFELEIESSQKDVVAANEA
VVAAEKALQAAVEEEEELSMKVGELKALYDEAKASLTELENNLKSCSDELSSLAREKSKL
IKKAETAELEGKKMSVKITKFHSEKSKAEKILGSMMNKYAWIETEKEAFGVAGGDYDFEE
TCPNLMSKQLKDLQAEQTSLAKKINKKVMGMIEKAEGEYTELLRKRKVVENDKKKIETVI
ENLDVKKKVELERTWKKVNKDFGSIFSTLLPGTMAKLVPPKGMAAWEGLEVKVAFGNCWK
QSLSELSGGQRSLIALSLILSLLLYKPAPMYILDEVDAALDLSHTQNIGNMLKTHFSQSQ
FIVVSLKEGMFNNANVIFRTKFVDGVSTVSRTIGSGANQRPRGLLTDQDNTLANERAKKR
RGGRGENQSGKENSVEC
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgcatatcaaagagattgtcgttgacgggttcaagtcgtatgctcaccgtacggtgatt
gctggcttcgatccccacttcaacgccatcaccggcctcaacggctccggcaaatccaac
atcctcgactccatctgcttcgtcctcggcatcaccaacctctcccaagtccgtgccggg
aacctctccgaactagtctacaaacaaggccaggcgggcgtcaacaaggcttccgtcacc
atcgtctttgacaacgaagacgaatccagcagtccggtgggatacgagcagtgcaaggag
gtcaacgtgacacgacaggtgttgatcgggggcaagagcaagtacttgatcaacgggagg
aacagcccggcgggtcaagtggccaatttgttccattcggtgcagttgaatgtcaataat
ccgcattttctaatcatgcaggggcgtattacgaaggtgctcaacatgaaacccgatgag
attctcggtatggtggaagaagcggcggggacgcgcatgtacgagaataagaagaatacg
gccatcaagacgattgagaagaagcaaatgaaggtggatgaaattaactccattttgtca
gaggagattacccccacattggaaaggttgaggggagagaagcagcagtatttgaagtgg
agtaagaacaatgctgacattgagcgcattgaacgatttgtcgtggcgagtgagtacatg
tcggctcaggagacgcttagtaagaactcagaagatgtggctcagatggaagaggtggtg
gcgatgcacgaggagactatgcgtgtggcgagagaggaagtggaagcgaaggaaggagaa
atggccaagttgtcggaacaaatgaatagtgaattggaatcatctcacaacgaagccaaa
gctgaagaggagaagcgttccaaggatctagtcaaggctacttccgcactggagaacaag
aaatcagccgtagccaccgccaccaaagaactccacgaagcccaatcctacgtctccgag
tccaaaaatgcaatcacccaaatgcaatccaacatttccaaagaattagattctatccaa
aaagccaaagacgaagccctctcagccgaagcgacgttggaacgcttgaacaaggagtat
caaaacatgtgtgctggtattagtagtgaggagggagaagagggacggactttgcccgag
cagattagtaaggcttatagtgatgcgaataatgcagaggcgaggagtaagcaggctggg
atgaagattgagcatcttgccaagagtttgaagtccgtggagaaggatatgaagaaggag
gaggcatccgcatccaagctttccaagaagagggacgtgacaatggaaaaggtggagggt
cttcgtgcagagatctccaaaactgacttctccgaaactgaattcaatgcacttgagacg
gaaaagattgatttggagaactctgtctcgggtcttcaggagaaggtggatactctttct
gctcagttggagggcaggcttgcattcaactacagtgatcccgtccgtggatttgatcgt
tccaaagttaagggattggtggctcgtctcatcaatgtgaagctaccaaagcattctact
gctcttgaggtcgtggccggaggaaagttgtaccaggtcgtcgttgatgaggccatcacc
ggaaaggcattgcttaacaatggaaagcttcaaaggcgtgttaccatcattcctcttgac
aaagttgtgcctaggaacatgacctcatctactgtagggactgcatctgacatggccaag
aggcagcagacaactgcccagcctgccattgaacttgttggttttgacgaggaagttcgt
actgccattgagtacgtctttggatcgactcttgtcgttgatggtatgaaggcagccaac
tccatctgtgatgctaccaagacgagaactgtcactctcgatggagatgtgtacgaacca
tctggtttgatttctggaggatcaaaggacaatctcggatctactttgggaaggatcacg
gaattgtcggctgctacagcagagctcaaggagaagtctgccaggttgaggactgtcgtc
aacaagttggagagcatgtccgcccaatccaagcaattcgacaaactcagtggagacctt
gaaattgctagttcggagcttgctggtattgacaagcacatctctcagacgtcgtacggt
atgctcaaggataagtttgatgccatgacgaaggaggtcgccgatgccaatgaggaagtt
gagacaatgaagaagactaaggaggagaaatgggagttgtacaacgagctcaaggagaag
gaggcccagttgactcttgatagggagaacaggttgaaggatgtcgaggcccaagtaaaa
aaggctaaggagaacgtcgttgcgaaggagaatgctgctcgtgaggctgaggtcaagtct
caagagtttgagcttgagatcgagagctctcagaaggatgtggttgctgccaacgaagct
gttgtcgccgccgaaaaggccttgcaagcagccgtcgaggaggaggaagagttgtcgatg
aaggttggagagctcaaggcattatacgacgaggccaaggccagtcttaccgagttggaa
aataatctcaaatcttgctccgatgaactcagctctctcgcgagggagaaatctaagctc
atcaagaaggccgaaactgctgaactcgagggaaagaagatgtcagtcaagatcaccaaa
tttcactctgagaaatccaaggctgagaagatcttgggcagcatgatgaacaagtatgct
tggattgagacggagaaggaggcatttggggttgctggtggagactacgactttgaggag
acttgtcctaatctaatgagcaagcaactcaaggatctgcaggcggaacagacgtcattg
gcaaagaagatcaacaagaaggttatgggtatgattgaaaaggccgaaggcgagtacacg
gagcttcttcgcaaacgtaaggtcgtagagaatgacaagaagaagatcgagactgtcatt
gagaacttggacgttaagaagaaggtcgagctcgagcgtacttggaagaaggtcaacaaa
gactttggatcaatcttctctacgttgttgcctggtaccatggcgaaattggtacctcct
aaaggtatggccgcctgggaagggctcgaggtcaaggtcgcctttggtaactgctggaag
caaagtctcagtgagctcagtggtggtcaacgttccttgattgcgttgtcgttgattctg
tctctcttgttgtacaaacctgcgcccatgtacattctcgacgaggtagatgctgctctt
gacctgagccatactcagaacattgggaacatgctcaagactcacttctcgcagagtcag
ttcattgttgtttcattgaaggagggtatgttcaacaacgccaacgtcatcttccgtacc
aagtttgttgatggcgtatcaactgtttcgcgaacgattggatcgggtgcgaaccaaagg
ccaaggggcctcctcaccgaccaagacaacactctcgcgaatgaacgtgcaaagaagcgc
cgaggtggacgcggagagaaccagtctgggaaggagaattctgttgagtgctga
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