Thalassiosira pseudonana: THAPSDRAFT_15819
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Entry
THAPSDRAFT_15819 CDS
T01078
Name
(RefSeq) predicted protein
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
tps
Thalassiosira pseudonana
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
tps01009
]
THAPSDRAFT_15819
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tps03019
]
THAPSDRAFT_15819
04131 Membrane trafficking [BR:
tps04131
]
THAPSDRAFT_15819
03036 Chromosome and associated proteins [BR:
tps03036
]
THAPSDRAFT_15819
Enzymes [BR:
tps01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
THAPSDRAFT_15819
Protein phosphatases and associated proteins [BR:
tps01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
THAPSDRAFT_15819
Messenger RNA biogenesis [BR:
tps03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
THAPSDRAFT_15819
Membrane trafficking [BR:
tps04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
THAPSDRAFT_15819
Chromosome and associated proteins [BR:
tps03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
THAPSDRAFT_15819
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
7446792
NCBI-ProteinID:
XP_002286754
JGI:
15819
UniProt:
B8BQN3
LinkDB
All DBs
Position
1:complement(1276939..1277622)
Genome browser
AA seq
228 aa
AA seq
DB search
YFTPDSVREAKAAASSLCKLVSNVVSGDLDSGFAVIRPPGHHAEPGLAGGYCVINNVAVA
ASYAQEQLGVKKVLIVDWDVHHGNGTQKCFFDNPNVMYFSAHRYHGGNFFPFLQQGGPSS
VGNGAGRGFNMNVGWNDKKMGDDEYLVVWEKLLMPVANEFNPDLVIVSAGFDAAHGDMGE
CDITPECFARLTRRLKTLANGKVVCALEGGYVRSVLCKCIESVLSSLL
NT seq
684 nt
NT seq
+upstream
nt +downstream
nt
tactttacacctgactccgtgcgggaagccaaggctgctgcttcttctctttgcaagctc
gtatctaacgtagtttctggggaccttgatagcggtttcgcggttattcgcccccctggc
catcatgcggagcctggtttggctggtggttactgtgttatcaataacgtagctgttgct
gcttcttatgctcaagagcaacttggtgtcaagaaagttctcattgtcgactgggatgtc
caccacggtaacggaactcagaagtgtttctttgacaaccccaacgtcatgtacttttcc
gcacacagatatcacggtggtaacttcttccccttcttgcaacaaggtggaccttcaagc
gttggaaatggagctggaagaggattcaacatgaatgtcggctggaacgacaagaaaatg
ggagatgatgagtatctcgttgtgtgggagaagctactgatgcctgtggccaacgagttt
aaccctgatcttgtcattgtcagtgccggctttgatgctgctcatggcgacatgggagaa
tgcgacattactccggagtgctttgcaagattgacacgtcgcctcaagacattggctaac
ggaaaggtcgtgtgtgctttggagggtggctacgtgagaagcgtactctgtaaatgtatt
gagagtgttctatcctcattgctt
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