Thalassiosira pseudonana: THAPSDRAFT_16440
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Entry
THAPSDRAFT_16440 CDS
T01078
Symbol
RP3A
Name
(RefSeq) RP3A,-like protein to dna-directed RNA polymerase II third largest subunit
KO
K03011
DNA-directed RNA polymerase II subunit RPB3
Organism
tps
Thalassiosira pseudonana
Pathway
tps03020
RNA polymerase
tps03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
THAPSDRAFT_16440 (RP3A)
09124 Replication and repair
03420 Nucleotide excision repair
THAPSDRAFT_16440 (RP3A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tps03021
]
THAPSDRAFT_16440 (RP3A)
03400 DNA repair and recombination proteins [BR:
tps03400
]
THAPSDRAFT_16440 (RP3A)
Transcription machinery [BR:
tps03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
THAPSDRAFT_16440 (RP3A)
DNA repair and recombination proteins [BR:
tps03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
THAPSDRAFT_16440 (RP3A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_L
RNA_pol_A_bac
Motif
Other DBs
NCBI-GeneID:
7443844
NCBI-ProteinID:
XP_002289111
JGI:
16440
UniProt:
B8BWN8
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Position
3:complement(2400239..2401401)
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AA seq
297 aa
AA seq
DB search
QRFPKVEILSMAPHHIQFILSETDTSMANTLRRIMIAEVPTLAIDLVEYSENSSVLNDEY
IAHRLGLVPIRFMAEGSLKECVCYDRCPRCCVEFELDVNFDKVNQTRPDTERDLALTVTS
RDLISNNMLVSPAHFLNEEEQDESHDEGISIVKLGPGQHLKLKAIARMGISKEHAKWCPV
AVATYRFWPIITINEEACNMLTLEQKQELVEACPDRILELDEITGNLVAVENAYEMATFT
EDLKTVQNAMKKRPEDDDFVNVVQSTDRFVFSVESTGAMDAEEILLSSLRVLKDRLN
NT seq
891 nt
NT seq
+upstream
nt +downstream
nt
caacggttccccaaggtggaaattctctccatggctccgcaccatatccaattcatcctc
tccgaaaccgacacctccatggccaataccctccgtcgtataatgatcgccgaggtgccc
acgttggctattgatttggtggagtacagtgagaatagcagtgttttgaatgacgagtat
attgctcatcggttggggttggtgcctattaggtttatggcggaggggagcttgaaagaa
tgcgtctgttacgaccgctgtccccgttgttgtgtggagtttgaattggatgtgaacttt
gataaggtgaatcagacgaggcctgatacggagagagacttggcgttgacagtgactagt
agggacttgatatccaacaacatgctcgtctccccagcccacttcctcaacgaagaagaa
caagatgaatcacacgacgagggtatctccatcgtcaaacttggccccggccaacacctc
aaactcaaagccatcgcccgtatgggtatctccaaagaacatgccaaatggtgtccagtg
gcagtggccacgtatcgcttctggccaatcattacaatcaacgaggaggcgtgcaatatg
ttgactttggagcagaagcaggagttggtggaggcttgtcctgatagaatattggagttg
gatgagattaccgggaatttggttgcggtggagaatgcatatgagatggcaacgttcacg
gaggatctaaagacagtgcagaatgcaatgaagaagaggccggaggatgatgactttgtg
aatgtggtgcagagtacggataggtttgtgttctcggtggagagcacaggggctatggat
gcagaggagattttgttgagttcgttgagggtgttgaaggataggttgaat
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integrated database retrieval system
