KEGG   Thalassiosira pseudonana: THAPSDRAFT_17935
Entry
THAPSDRAFT_17935  CDS       T01078                                 
Name
(RefSeq) predicted protein
  KO
K12591  exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
tps  Thalassiosira pseudonana
Pathway
tps03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tps00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    THAPSDRAFT_17935
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tps03019]
    THAPSDRAFT_17935
Messenger RNA biogenesis [BR:tps03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Exosome cofactors
     THAPSDRAFT_17935
SSDB
Motif
Pfam: DNA_pol_A_exo1
Other DBs
NCBI-GeneID: 7443598
NCBI-ProteinID: XP_002291419
JGI: 17935
UniProt: B8C5L5
LinkDB
Position
6:complement(<745173..>745760)
AA seq 181 aa
DPGIWIGNEDEMTELATRINDGEQSGEIREIALDLEAHSHRTFAGFVCLIQLSIHISSGY
DFLIDALSLRHVIPTCLGPILANPNILKVMHGADSDIPWLQRDFGCYVVNLFDTGRASRA
LKFQSAGLAFLLRKYAGLDPDKAHQLSDWRRRPLPDDMRTYAVADTRYLLDIYDKLRLEL
K
NT seq 543 nt   +upstreamnt  +downstreamnt
gaccccggtatttggattggaaacgaagacgaaatgactgaacttgccacccgtattaat
gacggggaacaaagtggggagattcgggagattgctcttgatttggaagcacactctcat
cgtacatttgctggttttgtgtgtctcattcagttgagtattcacatttcatctggatat
gactttctcattgatgccttgtcacttcgtcatgtcattccaacgtgtctgggccctatt
ctggcaaatccaaacattctgaaggtgatgcatggtgccgattccgatattccgtggctt
cagcgtgactttggttgctacgtcgtcaatctctttgacactggacgggcatcgcgggct
ttaaagtttcaatctgccggattggcattccttctcaggaagtatgcggggcttgaccca
gataaagcgcatcagttgagtgattggaggagaaggccattgccggatgacatgcgtacc
tatgcagttgctgataccagatacttgcttgatatttacgacaagcttcgtttggagttg
aag

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