Thalassiosira pseudonana: THAPSDRAFT_17935
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Entry
THAPSDRAFT_17935 CDS
T01078
Name
(RefSeq) predicted protein
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
tps
Thalassiosira pseudonana
Pathway
tps03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
THAPSDRAFT_17935
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tps03019
]
THAPSDRAFT_17935
Messenger RNA biogenesis [BR:
tps03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
THAPSDRAFT_17935
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol_A_exo1
Motif
Other DBs
NCBI-GeneID:
7443598
NCBI-ProteinID:
XP_002291419
JGI:
17935
UniProt:
B8C5L5
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Position
6:complement(<745173..>745760)
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AA seq
181 aa
AA seq
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DPGIWIGNEDEMTELATRINDGEQSGEIREIALDLEAHSHRTFAGFVCLIQLSIHISSGY
DFLIDALSLRHVIPTCLGPILANPNILKVMHGADSDIPWLQRDFGCYVVNLFDTGRASRA
LKFQSAGLAFLLRKYAGLDPDKAHQLSDWRRRPLPDDMRTYAVADTRYLLDIYDKLRLEL
K
NT seq
543 nt
NT seq
+upstream
nt +downstream
nt
gaccccggtatttggattggaaacgaagacgaaatgactgaacttgccacccgtattaat
gacggggaacaaagtggggagattcgggagattgctcttgatttggaagcacactctcat
cgtacatttgctggttttgtgtgtctcattcagttgagtattcacatttcatctggatat
gactttctcattgatgccttgtcacttcgtcatgtcattccaacgtgtctgggccctatt
ctggcaaatccaaacattctgaaggtgatgcatggtgccgattccgatattccgtggctt
cagcgtgactttggttgctacgtcgtcaatctctttgacactggacgggcatcgcgggct
ttaaagtttcaatctgccggattggcattccttctcaggaagtatgcggggcttgaccca
gataaagcgcatcagttgagtgattggaggagaaggccattgccggatgacatgcgtacc
tatgcagttgctgataccagatacttgcttgatatttacgacaagcttcgtttggagttg
aag
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