KEGG   Thalassiosira pseudonana: THAPSDRAFT_19126
Entry
THAPSDRAFT_19126  CDS       T01078                                 
Name
(RefSeq) predicted protein
  KO
K14404  cleavage and polyadenylation specificity factor subunit 4
Organism
tps  Thalassiosira pseudonana
Pathway
tps03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:tps00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    THAPSDRAFT_19126
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tps03021]
    THAPSDRAFT_19126
   03019 Messenger RNA biogenesis [BR:tps03019]
    THAPSDRAFT_19126
Transcription machinery [BR:tps03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     THAPSDRAFT_19126
Messenger RNA biogenesis [BR:tps03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     THAPSDRAFT_19126
SSDB
Motif
Pfam: zf_CCCH_4 zf-CCCH zf-CCCH_2 Torus zf-CCCH_4 zf-CCCH_12 zf-CCCH_3 zf-CCCH_DUS3L Zn_finger_prot zf-CCCH_tandem
Other DBs
NCBI-GeneID: 7446332
NCBI-ProteinID: XP_002291629
JGI: 19126
UniProt: B8C4J7
LinkDB
Position
6:complement(<1788596..>1789021)
AA seq 103 aa
RLRTVVCRHWLRDLCMKGAACEFLHQYDLSKMPLCRHGDRCKVKDCPFRHINEADRLECV
FYSQGFCIHGPFCRYRHVRRERADLPHFLSGECPFGDGCHFAH
NT seq 309 nt   +upstreamnt  +downstreamnt
aggttacgtaccgtggtgtgtcgtcactggttgcgtgatttgtgtatgaagggagcggcg
tgtgagtttttgcatcaatatgatttatccaagatgccactgtgtcgccatggcgatcgg
tgtaaagtgaaggattgtccatttagacacatcaacgaagcggatcggttggagtgtgtc
ttttacagtcagggattctgcattcacggtccattctgcaggtataggcacgtgaggagg
gagagggccgacttgccacactttttgagtggggagtgtccctttggagatggatgtcac
tttgctcat

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