KEGG   Thalassiosira pseudonana: THAPSDRAFT_19374
Entry
THAPSDRAFT_19374  CDS       T01078                                 
Name
(RefSeq) predicted protein
  KO
K12883  nuclear cap-binding protein subunit 2
Organism
tps  Thalassiosira pseudonana
Pathway
tps03013  Nucleocytoplasmic transport
tps03015  mRNA surveillance pathway
tps03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tps00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    THAPSDRAFT_19374
  09122 Translation
   03013 Nucleocytoplasmic transport
    THAPSDRAFT_19374
   03015 mRNA surveillance pathway
    THAPSDRAFT_19374
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tps03019]
    THAPSDRAFT_19374
   03041 Spliceosome [BR:tps03041]
    THAPSDRAFT_19374
Messenger RNA biogenesis [BR:tps03019]
 Eukaryotic type
  mRNA processing factors
   5' end processing
    Cap binding complex
     THAPSDRAFT_19374
Spliceosome [BR:tps03041]
 Common components
  Common spliceosomal components
   Cap binding complex
    THAPSDRAFT_19374
SSDB
Motif
Pfam: RRM_1 RRM_YTH1 Nup35_RRM_2
Other DBs
NCBI-GeneID: 7445210
NCBI-ProteinID: XP_002290373
JGI: 19374
UniProt: B8C3I2
LinkDB
Position
5:<1738097..>1738471
AA seq 125 aa
NATEKKLYWDRSHYDSPESQIRALAHSSTVYVGNLAFSTRTIHLRRHFEQLGPVADVQVG
LDRFKKTPCGFAFVEFRHRIDALSAVANLTGTKLDGRVIRVELDAGFKPGRQYGRGASGG
QVRDD
NT seq 375 nt   +upstreamnt  +downstreamnt
aacgccacagagaagaaactgtattgggaccgatctcactacgacagccccgagtctcaa
atacgcgcccttgcccattcctccacggtgtacgtcggcaacctcgccttctccacccgt
accatccacttgcgtcgacactttgagcaacttggacccgtagccgatgtccaagtgggc
ttggatcgatttaaaaagacgccatgtggatttgcatttgtggaattcaggcataggatt
gatgcactgagcgctgtggcgaatttgacagggacaaagttggatgggagggtgatacgt
gtggagttggatgcggggttcaagccggggaggcaatatggacgtggtgcgagtgggggc
caagtacgtgatgat

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