Thalassiosira pseudonana: THAPSDRAFT_19374
Help
Entry
THAPSDRAFT_19374 CDS
T01078
Name
(RefSeq) predicted protein
KO
K12883
nuclear cap-binding protein subunit 2
Organism
tps
Thalassiosira pseudonana
Pathway
tps03013
Nucleocytoplasmic transport
tps03015
mRNA surveillance pathway
tps03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
THAPSDRAFT_19374
09122 Translation
03013 Nucleocytoplasmic transport
THAPSDRAFT_19374
03015 mRNA surveillance pathway
THAPSDRAFT_19374
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tps03019
]
THAPSDRAFT_19374
03041 Spliceosome [BR:
tps03041
]
THAPSDRAFT_19374
Messenger RNA biogenesis [BR:
tps03019
]
Eukaryotic type
mRNA processing factors
5' end processing
Cap binding complex
THAPSDRAFT_19374
Spliceosome [BR:
tps03041
]
Common components
Common spliceosomal components
Cap binding complex
THAPSDRAFT_19374
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_YTH1
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
7445210
NCBI-ProteinID:
XP_002290373
JGI:
19374
UniProt:
B8C3I2
LinkDB
All DBs
Position
5:<1738097..>1738471
Genome browser
AA seq
125 aa
AA seq
DB search
NATEKKLYWDRSHYDSPESQIRALAHSSTVYVGNLAFSTRTIHLRRHFEQLGPVADVQVG
LDRFKKTPCGFAFVEFRHRIDALSAVANLTGTKLDGRVIRVELDAGFKPGRQYGRGASGG
QVRDD
NT seq
375 nt
NT seq
+upstream
nt +downstream
nt
aacgccacagagaagaaactgtattgggaccgatctcactacgacagccccgagtctcaa
atacgcgcccttgcccattcctccacggtgtacgtcggcaacctcgccttctccacccgt
accatccacttgcgtcgacactttgagcaacttggacccgtagccgatgtccaagtgggc
ttggatcgatttaaaaagacgccatgtggatttgcatttgtggaattcaggcataggatt
gatgcactgagcgctgtggcgaatttgacagggacaaagttggatgggagggtgatacgt
gtggagttggatgcggggttcaagccggggaggcaatatggacgtggtgcgagtgggggc
caagtacgtgatgat
DBGET
integrated database retrieval system