Thalassiosira pseudonana: THAPSDRAFT_20620
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Entry
THAPSDRAFT_20620 CDS
T01078
Name
(RefSeq) predicted protein
KO
K14312
nuclear pore complex protein Nup155
Organism
tps
Thalassiosira pseudonana
Pathway
tps03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
THAPSDRAFT_20620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tps03019
]
THAPSDRAFT_20620
Messenger RNA biogenesis [BR:
tps03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
THAPSDRAFT_20620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nucleoporin_C
Nucleoporin_N
Motif
Other DBs
NCBI-GeneID:
7449123
NCBI-ProteinID:
XP_002286591
JGI:
20620
UniProt:
B8BT32
LinkDB
All DBs
Position
1:complement(425930..>432395)
Genome browser
AA seq
2011 aa
AA seq
DB search
MASTIPSSSTQQSPTDPYITNHFHPLHLASTQILTALRQDESAPDADLYRRLISSSGSGG
GSHGYHVVSGSDGGLGSVAEGGASSPLSGGTPAASPVDDSNVIGSPFGVLRGSSRSNATA
STNDPTTPSNDSRTSKKAIPPTSHLQHAHSIPLPSTLANEAKKAKLSSLMGLLPEANLVW
LTCDDRLFLWSYAGDVAAGRSSSAAAAWGSTVVPTRAYQDREDFCSFHVPSGQCIVVEWC
IIVTTPEEAILCALARDHSPNYDATTDEDNDTATNNGGGFRHGNDSVLRLIPTRFILPTD
TVPLMSICGSKDGRIFMGGYDGCLYEMNYEGSSDSGRGGGSRSSESEMMEAAIDNYFDGE
GVFRLSSSMGGEDWKKWSEQAMISGGKRVLSALTFGSLEDYSSSLEQHHQRSRKCRKINH
SSVAPGLVSSVVPGAMIRVALGIFGSSTEAAARKGGPIVSLVLDEERHCLYTLGANGVVC
AYDVSPMVGSGVSGSSGSGAAGTAPGNHVNSSPRLACVFDAVASAKLYLDSVSRGRMYPP
STSQSIDLGTITFPGGIASAQAGVGGMEGAREILKRHDQETRMAKAGSSSSSSRMSRHDI
TNVAGILHPVSIHLVPGVESKSLTLVAVTGGGLRYYLSSLSSSYINSAQVSQGGFDYSGR
GSDFILARTRPSKKMTFCHIRAPPPYTSGDGNDDFRFELAPSAVNMMGSGASCGGIPPGI
HSSQGMKSGSAGGDVVKSFYGKGMFVLALDLEKGSIQNNKNKSSGGFFAKDSEGKKSSST
STVGDVIVVTLPDSAARVESSTSNSTNGTTSTALTVYTESQTSSRSVPGGVSETAILPAT
GVGGTSSPALSGGRTFDIVSHSNKQPSVVNLFMNSETPTDVELQAGLMPSYTPPKSQPRR
SNQSSGTSSALVVASDRGRGVVSAALSALSNYLRSGQGSGYQVGTVSTDPNGFGPSVMYR
VSFRYGCETIGFSNSAAEVSTMSRSGVRNSSISSVGTAKSARLPTWMLRPTAAPLNFQAS
QHLLPPGSGSVLVLNAGGLHFFSDSSLLNNLASVLLRANNVAKDDLVRNFFTSYGYVEGC
AMCFALATSRSSSASLRSKAEIAALTHAHKPSMTVVGSGDGRDPLSAYKFMPSSLYDGLV
KFSSRLLRPFWYKPAVIVTESRPIQSKSAYSNYYASLPAKVELLLDDYTLDDIRRPLVHL
QALMKKTFVPAVQSVPGVANKNSTDAMEVDEDGGQITRALQNQSRAAQRINNSDQNQDVT
PDELRAIARRTEERNMHSLYRLLSRCVQALNLMACLKYAHLTPALPEVQWGLLHGLTFYQ
LVTSQEGQQRVETLLNSLVSQGDNNLVSGLSTEGDLLADTLSRQCYLFFSSASRLTYLGF
KSAKDALSRPPQRVMLANQAASYLRAASRHWYDPALVAGRWSSKNTSESCDEIAVSAKDA
GSPLALAAGVLMDLGNAEGLADVCLICASNFGGSTVPRDERKETGEIPVEGMFDWEKGLY
HQPPSDQSGDRSSSQAIVTGIDVTPADALRTCHGILFYYVTKLLSEGGVANQRFAEDLVA
ACASSSDVKFLHSLYKHLLATNEVDTLLRIDSSTLENWLLKEKKDINLIWRYYSFHGRNV
LAGDTMFQRAVDLNEKISLDQRIECLTRAANSFSAALQSNNPGTNMMRLVGGYGQSKNLQ
EPQLSVDDLKTRITQIKEQLDVATLQRRVLTTVEQSENLNLESAKKEALSFTLVNVSDIY
NDYASPLNLFDVCLLILETCQHNQPDTINTLWKSILCEELLPCETNSESVLDFLRSLKAG
SVLENETIAYGDGNNGGNLQQFENGEWIPRLRTRITELGKEIYGKGADYTFPVDLILNEL
EGLRKVYDETRKDDSSSQPWPAQTLLDVGVPYNALLESYDSLQAQDRAVVGGVDVATRLQ
RFGSMSEMLELWVTAAISDDGDSYSLDLSLNGYANSASSQLARAINPGRLLAHIDAYKSA
LEGMVGGNAEYAERIFARFVSVEDKIRRSFF
NT seq
6036 nt
NT seq
+upstream
nt +downstream
nt
atggcctccactatcccatcgtccagcacccaacaatcaccaaccgatccctacatcacc
aaccacttccacccgctccatctagcatccacgcaaatcctcacggcacttcgtcaagat
gaatcggctcccgatgccgatttgtaccggaggttgatctcgagcagcggcagcggcggg
ggatcgcacggctatcatgtcgtgagcggtagcgatggcggattggggagtgtcgccgag
ggaggagcgtcttctccgttgagtggaggcactccagcggcgtctcctgtcgacgacagc
aatgtgattggttcaccctttggtgtcctccgaggatcctcccgcagcaacgccactgca
tccaccaacgatcccactacaccgtccaacgacagccgcacatccaagaaggccatccca
ccgacctctcacctgcaacacgcccactccatccccctcccctccacgctcgccaacgaa
gccaaaaaagcgaaattatcatcactcatgggtttattgcccgaggccaatttggtttgg
ctcacgtgtgatgataggttgttcttgtggagttatgctggtgacgtggcggccggaagg
tcttcatcggcggcggcggcgtggggatccaccgttgttcccacgagagcctatcaggat
agagaagacttttgttcgtttcatgttcccagtggacagtgcattgtggtagaatggtgc
atcatcgtaaccacgcccgaagaagccattctctgtgctcttgctcgtgatcattcaccc
aactacgacgctaccaccgatgaagacaacgacaccgccaccaacaacggcggtggcttc
cgtcacggcaacgactcagtactgcgacttatccccactcgattcattcttcctactgat
actgtaccgctcatgtccatttgtggatcgaaggatgggagaatattcatggggggatat
gatggatgtttgtatgagatgaattacgaggggagtagtgacagtggccgcggcggcggc
agtagaagttcggaatcggaaatgatggaagctgcaattgacaattattttgatggggag
ggagtgtttcgtctctcttcctccatgggtggtgaagattggaagaagtggtcggagcag
gccatgatttcgggtggaaaacgtgtgttatcggcattgacatttggttctttggaagat
tactcttcctctctggagcagcatcatcaacgatcgagaaaatgtcgcaagattaatcat
tcgagtgtggcacctggactggtatcgtcggttgtgcctggggcgatgattcgtgtggca
ttgggtatctttggttcgagtacggaagccgcggctaggaaaggagggcctattgtgtca
ttggtgttggatgaggaaagacattgtttgtatacgttgggcgctaacggggtggtgtgt
gcctacgatgtgtctccaatggttgggagcggtgtgtctggctcgtctggaagtggggca
gctggtaccgccccgggaaatcatgtcaattcttctcccaggctcgcgtgtgtgttcgat
gccgtagcatcggccaagctatatctcgactctgtgtctcggggacgaatgtatcctccc
tccacatctcaatccattgatcttggcacaatcacattcccgggaggtatcgcttcggca
caggcaggcgtgggtggaatggagggtgcacgtgagatactcaaacgacatgatcaggag
acaagaatggcaaaggctggttcatcatcgtcttcgtcgcgaatgtcaagacatgacatc
acaaatgttgcgggaatattgcatccggtgtcaatccacttggtccctggtgtagaatca
aaatctttgacgctcgtggctgtgactggtggggggttgaggtactatctctcgtcgctg
tcgtcatcgtacatcaactcagcacaggtatctcagggaggttttgactactcggggaga
gggagtgacttcatcttggctcgcacacgtccgagtaagaagatgaccttttgtcatatc
cgtgcaccgcctccttacacttcgggtgatgggaatgatgacttccgatttgagcttgcg
ccgtctgcagtcaatatgatgggttctggtgcgtcttgtggcggcattcctccgggtatc
catagcagtcaaggaatgaagagcggcagtgcgggaggggacgtcgtgaagagtttctac
gggaaaggaatgtttgtgcttgccttggatttggagaagggcagtattcagaacaacaaa
aacaagtcgtctggaggcttcttcgcaaaggattctgagggcaaaaagtcgtcttccacg
tccacagttggtgatgtcatcgtcgttacattgccagattctgcagctagagtagagtcg
tcaactagcaactcaacaaacggcaccacatcgactgctctcacagtctacacagaaagc
cagacttcttcacgtagcgtcccaggtggtgttagcgaaactgccattcttccggcgaca
ggagttggtggtacaagctctccagccctttcaggtggtagaacttttgatatcgtgtct
cacagcaataaacagccgtcagttgtgaatctctttatgaattcagaaacaccaaccgat
gtggagcttcaggcgggattgatgccttcgtacactcctcccaaatctcaacccaggaga
tctaaccaatcatcggggacctcgtcggcgttggttgtcgcaagcgatcgtggacgaggt
gttgtatccgctgcgttgtcggccctatcaaactatctgcgtagtggccaaggatcgggg
tatcaggtcggcaccgtctcgacagatccaaacggatttggcccgtcagtgatgtacaga
gtctcgtttaggtatgggtgtgaaacgatcggattcagtaactctgcagcagaagtttcg
acgatgtcacggtctggggtaaggaacagctccatctctagtgttggcactgcaaagtcg
gcaagacttccaacttggatgttgaggccaacggcagcacctcttaacttccaggcttcg
caacacctgttgcctccaggctcagggtctgttcttgtgttgaatgcaggagggttgcat
ttcttctcagactcttcacttctaaacaatctcgcgtcggtgcttttacgagcgaacaat
gttgcaaaagacgacttggtacgaaacttcttcaccagctacggttacgtcgaggggtgt
gcaatgtgtttcgcactggcaacgagtagatcaagcagtgcttccctcagaagtaaagct
gagattgccgctcttacccacgctcacaaaccttcaatgacggtggtcggttctggagac
ggacgtgatcctctgagtgcatacaagtttatgccatcatctctctacgatggtttggtg
aagttctcgtcgcgtcttttgcgtcccttttggtacaagccagcagtaatcgtgaccgag
agtcgcccaattcaaagcaaatcagcttactcaaactattatgcatcgcttcctgcgaaa
gtggagttgctacttgatgattatactttggacgatattcgacgtcccctcgtgcaccta
caagcattgatgaaaaagacatttgttccagcagtacaatcggtccctggtgtagcaaac
aagaattcaaccgatgcgatggaggtcgatgaagatggaggtcaaatcactcgcgcactt
caaaaccaatcacgtgctgcgcagagaatcaacaattctgatcagaaccaagatgttacc
ccagatgagctacgtgcaattgcacgtcggacagaagagcgtaacatgcattctctctac
cggcttttgagcaggtgcgttcaggcgctcaacctcatggcgtgtctcaaatatgctcat
ttgactcctgccctaccggaggttcaatggggtcttcttcacgggttgacgttttaccag
ttggttacgagtcaggaaggccagcaacgtgttgagactctcctcaactccctcgtcagc
caaggagacaacaatcttgtcagcggtttgtcgacggagggagatttgcttgcagataca
ctgtctcgacaatgctacctgttcttctcttccgcctcgaggttgacttatttgggtttc
aaatcggcgaaagatgccctcagtcgtcctcctcagcgtgtaatgttggcgaatcaggca
gcgtcttatcttcgtgccgcatccagacactggtacgaccctgctctagtagctggtcga
tggtcgtcgaagaatacttcagagagctgcgatgagatcgcagtgtcggccaaggatgcc
ggaagtccacttgctcttgctgctggggtcttgatggatcttggcaatgccgagggattg
gcggatgtgtgcttgatctgcgcatctaatttcggagggtcaactgtcccacgggacgaa
cgaaaagaaacgggagagatccccgtcgagggaatgtttgattgggagaaaggtctgtat
catcagcctcctagtgatcagtcgggagatagatcatccagtcaagcaattgtgacgggg
attgatgttactccagctgacgcgctgcgcacatgtcacggtattttgttttactacgtc
accaaattactctccgaaggtggtgttgccaatcaacgatttgctgaggatttggtggct
gcgtgtgcatcttcgtcggatgtcaagtttcttcactctctttacaagcatctcttggct
accaacgaggttgatactctgcttcgcatcgacagctctactcttgagaattggttgcta
aaggagaagaaggacatcaatctaatatggaggtattactcttttcatggtcgcaatgta
cttgctggagatacaatgttccaaagagccgtggatctcaacgaaaagatttctttagat
cagagaattgagtgcctcactcgtgctgccaattcattctcagcggcattacaatcaaac
aatcctggcacaaacatgatgcgtttagttggaggatatggtcagagcaagaatttgcag
gaaccacaactgtctgtggatgatctcaagactagaatcactcagatcaaagagcaactg
gacgtcgcaactcttcagcgcagggttcttacaacggtagagcagtcggagaaccttaat
ctggagtctgcgaagaaagaagcactgtctttcaccctagtgaatgtctctgacatctac
aatgattatgcatctcccttgaacctatttgatgtgtgcttgctcatacttgagacttgc
caacacaaccagccggacacaatcaacacactctggaagagcatcttgtgtgaggaactt
ctcccttgcgagacaaattctgaatctgtgttggactttctgagatccctcaaagccgga
agtgtgctggagaacgagacaatcgcttatggagatggtaacaatggaggcaaccttcag
cagtttgagaatggagagtggattcctcgccttcgcactcgtatcacagagttgggaaaa
gaaatatacggcaaaggtgctgattacacttttccagtggatttgattctgaatgagctt
gaaggtctacgcaaagtgtacgatgaaactcgcaaggacgatagttcgtctcagccatgg
cctgctcaaactttattggacgttggggttccatataatgcattactcgagtcttatgat
tcacttcaagctcaagatcgtgcagttgttggaggtgttgacgtcgcaacacgactccaa
cgttttggaagtatgagtgaaatgcttgagctttgggtcactgcagccatttcagatgat
ggcgactcgtattcactagatctatctctcaatggatacgcaaacagcgcgtcaagtcag
ttggctcgcgccatcaatcctgggagattgctagcgcacatcgatgcgtacaagtctgcc
cttgagggaatggtgggaggcaatgctgaatatgcggaaagaatctttgctcgtttcgtc
agtgtggaggataaaataaggaggtctttcttttga
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integrated database retrieval system
