Thalassiosira pseudonana: THAPSDRAFT_21098
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Entry
THAPSDRAFT_21098 CDS
T01078
Name
(RefSeq) predicted protein
Organism
tps
Thalassiosira pseudonana
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rhomboid
Motif
Other DBs
NCBI-GeneID:
7445078
NCBI-ProteinID:
XP_002287124
JGI:
21098
UniProt:
B8BT98
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Position
2:66796..70475
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AA seq
866 aa
AA seq
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MKILSSLLAAALLRTTTVLSNDVVHTSNSNQLATGLSLLNEMKLLQESLSNLQVLLQDEV
IRNDEEVMNKAAKLFRRARWLVYSGTRGQQQRGQVSLRGNSSLSSQAMRGPVALHHGIGS
GEAPLAADEGDRLLVQQQQQLPDDVVARNLYDSTITFPECRELYLDDCLELISEELAQLQ
MTCEIVIHSKRTIDQEGYNKVVIVTDLAAEAVKGRNNDGIVSYPFMWDDATLGLHAIGVD
GKFDCSQMNPEECCSFIQGSVPNADVKGNYIQCHIFVPFGGVGNKKRTSNLNGRYQTSLS
SGSLPNRKSEARGPRTSSSHTEQQVIRRAVPKSKPPAPLTLVFSSTSRYTDTTPFLQTTF
IGCSYAVGRRGVLIVFPASLRSKDATQVERAPYHRRLDFDLDDDGYESVHDSSSFEDELI
LQQTAASFRGGAATAAIASKQNNKIGTTGWLTHKQPPSKKKQSQRKQLQSQIQQLNALQR
QKIRQFRKNFRQKQRQFQYSLYNLNSRLNGGDFPPPPYSLWKMEPDGQIGKNTLTGNIFL
LNIAVFGMQTLYPALTGWGAKRSDLLLEGRQLHRLITPIFLHGGIGHLMANSYSLKSMGM
NIERSFGRSRFVATYLLSGIMGNVVSAIQSPNPAVGASGAIFGLVGAYYTFLSRNQDLFG
YSGQRQKSALIETIGFNLLLGMTNPMIDNWGHIGGFIGGVGCAYLFGPKLYVARVPLGED
TLDAGGFGVGKVVIDRPMVAFRMPEVVEEGMIWVGDGVKDLGTRVKLTTRGLLNGGGDQQ
LFVGNEVFSLGGGSNENEEVYRLVKKSKDGSGTVPLEGNVNVTPIDGLKQNVSELDPTTA
KRLRQARRSTPRPGMSLRPRYGHLYR
NT seq
2601 nt
NT seq
+upstream
nt +downstream
nt
atgaagatcctctcctctcttctcgccgcggcccttctccgaacaacaacagtcctctcc
aacgacgtcgtccacacatccaattccaatcaactggccaccggtctctccctcctaaat
gagatgaagctcttacaagagtctctctccaaccttcaagtgttattgcaagatgaagtt
atacggaatgatgaagaggtgatgaataaggctgccaaattgtttcggagggcgagatgg
ctggtgtacagtgggacacgggggcagcaacagcgggggcaggtttccttgcgtggcaat
tcttcattgtcctcgcaggcgatgagagggccagtggcgttgcatcatggaattggctcg
ggggaagctccattggcagcagacgagggagatagattgttagttcaacaacaacaacaa
ctgcccgatgatgttgttgctagaaacttgtacgattcgactatcaccttcccagaatgt
cgagaactctatctagacgactgccttgaactcatatccgaagaactcgcccaactccaa
atgacatgtgaaatcgtcatccactccaaacgtaccatcgaccaagaggggtacaacaag
gtcgtcatcgtaactgaccttgctgccgaagctgtcaaaggtcggaataacgatgggatt
gtgagctatcccttcatgtgggatgatgccacattgggattacatgctattggtgtcgat
ggaaagtttgactgtagtcaaatgaatcctgaagagtgttgtagtttcattcaggggagt
gtgccgaatgctgatgtcaagggcaattatatccagtgtcatatctttgttccgtttggg
ggagtggggaacaagaagaggacctctaacttgaatggtcgttatcaaaccagtctttct
tctggcagtcttccgaacagaaaatccgaagcccgtggcccccgcacttcatcgagtcac
acggaacaacaagtaattaggagagccgtaccaaaatcaaagccacccgcgcccctgact
ctagtcttttcctccacctcccgatacaccgacaccactcccttcctccaaactacattc
atcggttgcagctacgctgtcggccgacgtggggtattgatcgtatttccagcgagtttg
agatctaaggacgcgacacaagtggaacgtgcaccatatcatcgtcgtctggactttgac
ctagacgatgatggatacgagtctgtacatgatagttcatcatttgaggatgaattgata
ctgcaacagactgcagcttcattcagaggcggtgctgcaaccgctgcgattgcatccaaa
caaaacaacaaaatcggtaccacaggatggctaactcacaaacaacctccttccaagaag
aaacaatcccagcgaaaacaactccaatctcaaattcaacaactaaatgccctccagcgt
caaaagatacgacaattccgtaagaactttcgtcaaaagcaacgacagttccaatactca
ttgtacaacctgaactctcgactcaacggtggtgactttcctcccccgccgtacagtcta
tggaaaatggaaccagatggtcaaattggcaagaatacattgactggcaacatctttcta
ctcaacattgcagtgtttggaatgcagactttatacccagcgttgacaggatggggagcc
aaacggtcagatttgctattggaaggaagacagctccatagattgattactcccatcttt
ctccatgggggtatcggacacctgatggcgaatagttatagtctcaagagcatgggaatg
aatattgaacgatcgtttgggaggtcgaggtttgtggcaacgtatctgctatcgggaata
atgggcaatgttgtcagtgcaattcagtctccaaatcctgcagttggcgcgagtggtgcc
atctttggtttggtgggagcatattacacgtttttgagtagaaatcaagatttgtttggg
tattctgggcaaagacagaagagtgctttgattgagacgattggattcaatctactgttg
ggcatgacgaatccaatgattgataactgggggcatataggtggtttcattggaggtgtg
ggttgtgcttacttatttgggcctaagctgtatgttgcaagagttccgttgggagaggat
acactggatgcaggtggatttggtgtcggaaaggttgtgattgatcgaccaatggttgcg
ttccgtatgccagaggttgtagaggagggaatgatttgggttggtgacggcgtgaaagat
ttgggtacacgggtaaagctgactactcgagggttactgaatggagggggagatcagcaa
ctgtttgtcggtaacgaggtattctccttaggtgggggcagcaacgagaacgaggaagtc
tacagattggtcaagaagagtaaagacggctccggcacagtacccttggagggaaacgtg
aatgtcacgccgatcgatggactgaagcaaaatgtatcagaattggatcctacgacagca
aagcgactgagacaagcgaggagatccacgccgaggcctggaatgtcgttacggccgaga
tacggtcatttgtaccgataa
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