Thalassiosira pseudonana: THAPSDRAFT_21138
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Entry
THAPSDRAFT_21138 CDS
T01078
Name
(RefSeq) predicted protein
KO
K26273
protein strawberry notch
Organism
tps
Thalassiosira pseudonana
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tps03036
]
THAPSDRAFT_21138
Chromosome and associated proteins [BR:
tps03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
THAPSDRAFT_21138
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_34
Helicase_C_4
Motif
Other DBs
NCBI-GeneID:
7452197
NCBI-ProteinID:
XP_002287660
JGI:
21138
UniProt:
B8BTJ1
LinkDB
All DBs
Position
2:complement(310736..>317030)
Genome browser
AA seq
1626 aa
AA seq
DB search
MSAAAAVAAAAASSTEVAKPAATTAAAGANKDKEDGVNAEQEITYTKYKPAKLKFGMDHP
GEEVPTSVSCNHHQTQLTMQQIDPVVENSTLSAVEPPDIKYNLAMPSSIIAKGKLSNLQL
EAIVYGCQRHDTDLPTEKKSRGKENDEPSDDITEDAMNVKGEGKTEGEEKGKDRTPIRAG
FLLGDGAGMGKGRTLAGFAVENIARGRKRHVWISVSSDLYEDAKRDLSDLGLTDYAENNC
YNLGKLPYGNLVDPPTSANGSKKNNGGKKGGKKTASKKVSGDYEEGVMFVTYSTLIGKSN
IGYTRLEQLIDWCGGEEFDGLIMLDECHKAKSVDLDENGNAKRAGKNSACSQIAAKVVEL
QNALPRARVVYCSATSVSEPKNLGFMSRLGLWGPGTEHPTGFNAFLQGIKRLGTGAMELH
AMHLKASGALVARTLSYEDCEFALEEGVTDPKIHDVYNASTELWTDLYHQLADRCAKLKS
KEGMQERIDNILGADNMSLNEELREHISLHEDSDSEGSDDDDEGIAEQRNLRRKFRNRKP
GHLKGLFWGAHQRFFRSLCIASKVDKAIEFAKEAIEDGHCCVIGLQTTGEARAKDAAKAA
GFDKDDGGDFDSFVSAPNEDLKRIIMQMFPLPPKPKGVIAPEFLNPLKKDEIIWGDGAES
TEGDEERPFRAARHKHFDYAEGVDKEGNIIEKSKTSISGKKRNKALKRARKKKSRRSSTS
TSATTVDPAADDSDMSRELGLRSDDSASDYSLSSDSESESEYVEKIKSTRRIPWNEITVG
KDQTTMTRAERIDYQRKILYKKEVERVQKWLATVDDLHLPPNPLDRLLNELGGSEKVAEL
TGRKTRQVKRYDPMEDKMMVVFEKRRADDGPVDKINIEEKNNFQNGDKLIAILSEAASTG
ISLHADRRVKNQRRRVHRQFCVSYAVFLLASNTVTLELPWSADKAIQQLGRTHRSNQVTG
PIYKFLISEVGGEARFAAAVARRLALLGALTQGDRRATGSANSLGLGNFDMDNDYGKRAL
RKMLDNIFNNSATSIVDGSNEHYSNTIEVIDKHLTIKLGTDRDIDLEEAIRPSEGDSKAD
QTYDTMMYNLLLGPLKAVAEDRSRAVRENRTIAGYVTSLQDGTETIATVKPKIDAEIKRA
KDAGLNFNNICGLWLYDVGIFSDMWEQGGIKGSFGVPKFLNRCLGLRLSKQAALTKYFLK
SLEAEIKEAKAAGLYDTGIKVSDVIQPKTIQGNSIEFVGKPRVFCFRGLAAKEEKVYLYT
VAIDHGVHSDDALTMYNKMNEQAPDPNSRSPITTGFYVNLPPWWPNKGRTFLSKDMVHKM
INEKKVWKGGYSVSQAIDIWSKEFSKADRPVSETYQFSCTGRHDEAHIFSGRIVPLLNKM
LSCAEVSATPEGIHGRPFEIVRVETTKATYANTKQEEAESNDKMQIETHFTYSCVDVNGE
DAVGKGIARPLDRKRKQCIIRGKITKYLSDEEMFCGHYSDGTRLKLDEEQARGGRVAFEK
ECKRLVGAGIPQEDASNMSCRTVGASKAMHKVRQPVLEDGEDEDPSSREKIFEEVFNGEI
PDTIVGLQFAQHDVNFKNYRVPLWDKVLMSMSEHLVKENVMSALQIAAFEKSENELFKEE
SSLEVV
NT seq
4881 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcagcagcggcagtagcagcagccgctgcatcctccaccgaagtcgcaaagccg
gcagcaactacagcagcagcaggcgcaaacaaggataaagaagatggagttaatgccgag
caggagatcacgtataccaagtacaaacctgctaaattgaagtttggcatggatcatcct
ggtgaggaagttcctacatctgtgtcttgcaaccatcatcaaacacaactcacaatgcaa
caaatagacccggtggttgaaaactctacactcagtgcagtagaaccccccgatatcaaa
tacaatcttgccatgccaagtagcatcattgccaaaggaaaactatccaatctacaactc
gaagcaatcgtctatggatgccaacgccatgatactgatttgcccacagagaagaagagc
cgggggaaggaaaatgacgagccttcagatgatataacagaggacgcaatgaatgtgaag
ggagagggtaagacggaaggagaggaaaaggggaaggatcgtactcccatccgagcaggc
tttctactaggtgacggggccggtatgggcaaggggagaacactcgctggctttgcagta
gaaaatattgcaagggggaggaaacgacatgtatggatcagtgttagttctgatttgtac
gaggatgccaaacgtgatttatcagatttgggattgactgactatgccgagaacaactgc
tacaatctcggcaagcttccatatgggaatcttgtcgatcctccgacgtctgcaaatgga
agtaagaagaacaacggagggaagaaaggggggaagaagacagcatcaaagaaggtctct
ggggattacgaagagggtgtcatgtttgtaacgtacagtactctcattggaaagagcaac
attggatatactcgactcgaacagctgattgattggtgtggtggggaggagtttgacggg
ttgatcatgcttgatgaatgccacaaagctaagtcggttgatttagacgaaaatggcaat
gccaagagagctgggaagaatagtgcatgttcacaaattgctgccaaagttgttgagtta
cagaatgcactgcctcgtgccagggtcgtctattgctcagccacgagtgtgtccgagcca
aagaatcttggtttcatgtctcggcttgggttatgggggcctggaaccgagcatccgact
ggtttcaatgcctttttgcagggtataaagcggttgggaactggtgcgatggaattacat
gcaatgcatttgaaagcctcgggagctctggttgctcgtacgctatcctatgaagattgt
gagtttgcgcttgaagaaggagtgacagatccaaagattcacgatgtatataacgccagc
actgaattatggacggatttgtatcatcaattggctgatcgttgtgcaaaactgaaaagt
aaagagggtatgcaagagcgaatcgataacatattgggggctgataatatgtcattgaac
gaggagctgcgtgagcatatttcactacatgaagattctgactcggagggtagtgatgac
gatgatgaggggatcgctgagcagcgtaacctccgaaggaagttcagaaatcgcaaacct
gggcacttaaagggattgttttggggagcacatcagagattcttcaggtctctatgtatt
gcttcaaaggtggacaaagcgattgagtttgccaaagaagctattgaagatgggcattgc
tgtgtcattgggctccaaacgactggggaggctcgcgcgaaagatgctgctaaggcagct
gggtttgacaaagacgacggtggcgactttgactcctttgtttcagctccaaacgaggat
ttgaagcgtatcattatgcaaatgtttcctcttcctcccaagccaaaaggagtgattgca
ccagagtttctcaacccattgaagaaggatgaaatcatttggggtgacggcgcagaatcg
actgaaggtgatgaggaacgcccatttcgtgctgctcgacacaaacattttgattatgca
gagggagttgacaaagagggcaatatcatcgaaaagtccaagacgagcatttccggaaag
aaaagaaataaggcgcttaagagggcaagaaagaaaaagagtcgcagaagctccacatcg
acttctgccaccactgtcgacccggctgctgatgatagcgatatgagcagagaattgggg
ttgagaagtgatgattccgccagtgattattctctcagcagtgatagtgaaagcgaaagc
gagtacgtcgagaaaatcaagtcgaccaggcgtattccttggaacgaaatcaccgttggt
aaggaccaaacgacaatgacgagagccgaaaggattgattaccagcgaaagattctatac
aaaaaagaggtcgagcgtgtgcaaaagtggttggcgactgtagacgatcttcatctccct
cctaaccctcttgatcgtcttttgaacgagttaggaggctctgagaaggtggccgaacta
actgggagaaagactcgtcaagtgaagcgttatgatcccatggaagataagatgatggtg
gtatttgagaagcgtcgagccgatgatggccctgtagataagatcaacattgaggagaaa
aacaatttccagaacggtgataagctgattgccattctctccgaagccgccagtactggt
atctctcttcatgccgatagacgcgtcaagaaccaacgtcgtcgcgtgcacaggcagttc
tgtgtatcttacgccgtgtttctcctcgcatccaatacagttacgctcgagcttccgtgg
tcagccgacaaggccatccagcagcttggcaggacgcatcggtcgaaccaagttaccggt
cccatatataagtttctcatctccgaggttggtggggaagctcgttttgccgcagctgtt
gctcggaggctagccttgctcggagcattgactcaaggagatagacgtgccacaggatct
gccaattctctcgggttgggcaactttgatatggacaatgactacggaaaacgcgctctt
cgtaagatgttggataatatatttaacaattcggccacgagcatcgttgatggatcaaat
gagcattactcaaacactatcgaggtgattgacaaacacttaacgatcaaactcggtacc
gatcgagacattgatctcgaagaggctattcgtccctctgagggtgacagcaaggcagac
caaacctacgacaccatgatgtacaacttactcctcggtccattaaaagccgtcgcggaa
gatcgttctagggcagtcagagagaatcgcactatcgctggatatgtcacttctctccaa
gacggaacagaaacaattgcaaccgtgaagcccaagattgacgctgaaataaagcgggct
aaagacgcagggctgaacttcaataatatttgtgggctttggttgtacgatgtgggtatt
ttcagtgacatgtgggaacaaggggggatcaaaggaagcttcggggtgcccaagttcctc
aatcgttgtctcggcctacgtctttcaaagcaagctgcgcttaccaaatacttcttgaaa
tcgctcgaggcagagattaaagaggcgaaggctgctgggctttatgatactggcattaag
gttagtgatgttattcaaccaaaaaccattcaaggaaatagcatcgagttcgttgggaag
cctcgagtgttttgttttcgtggtctagctgcgaaggaggaaaaagtctacctttacacg
gtggcaatcgaccacggtgtacattcagacgatgcactgacaatgtataacaaaatgaac
gagcaagcgcctgaccctaactcgaggagtccaatcaccactggtttctatgtaaaccta
cctccgtggtggcctaataaaggaaggacctttctcagtaaagacatggttcacaagatg
ataaacgaaaaaaaagtgtggaaaggaggctacagcgtgagccaggcgatagacatatgg
agtaaggagttcagtaaggcagatcgacctgtttctgagacctaccaattctcttgcact
ggtcgtcacgacgaagcgcacatcttctccggccgcatcgttcctttgctgaacaaaatg
ctcagctgtgccgaggtctccgctactcctgaaggaatacatggtaggccttttgagatt
gtccgtgttgaaacaaccaaggccacatacgccaacacgaagcaggaagaggctgagtca
aatgataagatgcagattgaaacacattttacctactcctgtgttgacgtcaatggcgaa
gatgcggttggaaagggcattgctcgccctcttgatagaaaaagaaagcaatgcattatt
aggggaaagattacgaagtatctatccgatgaagagatgttctgcggtcactactcagac
ggcacaagactcaagcttgacgaggagcaggcgagaggaggaagagttgcctttgaaaaa
gaatgcaagcgtttggtaggagctggtatcccccaagaggatgcttctaacatgtcctgt
cgtactgtgggtgcttccaaggccatgcataaagtgcgacagcccgtcttggaagacggc
gaggatgaagatccatcctcaagagaaaaaatcttcgaagaagtcttcaacggggagatt
ccggacacaatcgttggacttcagtttgcacagcatgatgtgaacttcaaaaattatcgt
gtaccactctgggacaaggtgttgatgagcatgagcgaacatttagttaaggagaacgtt
atgtcggccttacaaattgcagcatttgagaagtctgaaaacgagcttttcaaagaagaa
agttcacttgaggtagtgtag
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integrated database retrieval system