Thalassiosira pseudonana: THAPSDRAFT_2122
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Entry
THAPSDRAFT_2122 CDS
T01078
Name
(RefSeq) predicted protein
KO
K15078
structure-specific endonuclease subunit SLX1 [EC:3.6.1.-]
Organism
tps
Thalassiosira pseudonana
Pathway
tps03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
THAPSDRAFT_2122
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tps03400
]
THAPSDRAFT_2122
DNA repair and recombination proteins [BR:
tps03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
THAPSDRAFT_2122
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GIY-YIG
Motif
Other DBs
NCBI-GeneID:
7442203
NCBI-ProteinID:
XP_002287643
JGI:
2122
UniProt:
B8BTF7
LinkDB
All DBs
Position
2:complement(229238..231562)
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AA seq
774 aa
AA seq
DB search
MNDEVVILLDNSRDDSSDGEESISRSDRSGRKRNGERAASDDAAPDELPTQPLADDDDGE
LQIEVNEELSISSDDSDSSIDIDGAVGGIRSACRDQQAQDNDARNNDVNEQLMLELDDDE
DLNNSDQSDNIEICSISSGSDHQQFNLQQQCDVSSSTSSSSGIPGPSPKNKLFTSSFQRS
PLGSVIDTSSPKSRLNKSSLQSTMLRASSHEAQSTHELEDDEDEGWNSDCESASFPTSNV
QPVKRRCVVKISSGAPTGKCKANVTTFEAKKKSATTTGKGKGATKRVATKSVRQSSTATS
DLNELSTRTTEVENATTDTTKSTQKRGRKWGGGYYSSNNRKAKATNDDSSVSTALPTSLS
NNGNAKTTSNNNDNTKHYHTYLLRSLSPDHPLKTYIGFTTHPSRRIRQHNGILKNGGARR
TKRSGRPWTFTCVIAGFQDKITALQFEWAWQNVGRSKCFRDAVGDDALAKKMGRRMGVKA
RLEELRVLVKACLPFCLYSLTVYFPEAEYQEMFLRLVACADENVSGEATAAVKDCGESGA
TSGMVGGFMSTQVCAVEDMPFAKELEDEKERKREARKKKTAANKASKSKKTINCTTDISD
WIESGNEESDSCSMMDESDVSDFSAQLMRRGRAMRSSLGVVAEDLCSSDDESVAASPSSS
YGYSKQPASPAKQRATGSSSSDDEVLALDFQSLSIDKKKSDGDAFNKNDCDFSTITSGNS
SDDCSLGDDVQHLSGGLDAGTRRQNEKENIEPRVVAMAVVKQKNIDVYDLCFSP
NT seq
2325 nt
NT seq
+upstream
nt +downstream
nt
atgaacgacgaggtagtaatcctcctagacaacagcagagacgacagcagcgacggtgag
gaaagcatcagccgcagtgatagaagtgggcgtaaaagaaacggcgagagagcagcgagc
gatgatgctgctccagatgaattgcctacgcaaccgttggcagacgacgatgacggcgag
ctgcaaattgaagtgaatgaggagctgtccatttcgtcagatgattcagactcaagtatt
gatattgatggagctgtcggtggtatacgaagtgcatgtcgcgatcaacaagctcaagac
aacgatgcacgcaacaacgatgtcaacgagcagttgatgttggagctagatgatgatgaa
gatctgaacaacagcgaccagtcggacaatattgagatatgcagtatcagcagtggctca
gaccaccagcaattcaacctacaacaacaatgtgatgttagctcttcaacatcgtcatcg
tcaggcataccgggaccatctccgaaaaacaaactattcacttcctcatttcaacgttct
ccgttaggttcagtcatcgacacttcttcgcccaagtccaggttaaataagtcatctcta
caatctacaatgttgagggcatcgtcacatgaagctcaatctacacacgaattagaagac
gatgaggatgaaggttggaactcagattgtgagtctgcttcatttcctacgagtaatgtt
cagcccgtgaaacgaagatgtgttgtaaagattagtagtggtgctcctacggggaaatgc
aaagctaacgtgacaacgttcgaagcaaagaaaaagtctgctacaacaacaggtaaagga
aaaggtgcgacgaaaagggttgcgacgaagtcagtcagacagtcgtcaactgcaacctct
gatctgaatgaactatctacacgcacaaccgaagtagaaaacgcgacaacagacacaacc
aaatcaacgcaaaagagaggtcggaaatggggaggtggttactacagcagcaataaccgc
aaagccaaggcaacgaatgacgacagcagtgtttccaccgccctaccgacttcactatcc
aacaatggcaatgccaaaacaacctccaacaacaatgacaataccaaacattatcacacc
tacctcctccgctccctctcccccgatcatcccctaaaaacatacatcggcttcacaacc
cacccctcccgtcgcatccgtcaacacaatggcatcctaaaaaacggaggggcacgtcgt
accaagcgctcaggacgtccgtggacatttacctgtgtcattgctggatttcaagataag
attacagcattgcaatttgaatgggcgtggcagaatgttgggagaagtaagtgttttaga
gatgcggtgggggatgatgctttggcgaagaagatggggaggaggatgggcgtgaaggct
aggttggaggagttgagggtgttggtgaaggcatgcttaccgttttgtttgtattcgttg
acggtgtattttccggaggcggaatatcaggaaatgtttctgaggttggtggcgtgtgct
gatgagaatgtcagtggagaggcaaccgctgcagtaaaggattgtggcgagtctggtgct
actagtggcatggtgggggggttcatgagtactcaagtttgtgctgttgaggatatgccg
tttgccaaagagttggaagatgaaaaggagagaaagagagaagcaaggaagaagaagact
gctgccaacaaagcatccaaatccaagaagacgatcaactgtacaacagacatatccgat
tggatagagagtggcaatgaagagagtgatagttgctccatgatggacgagtcggacgta
tctgacttctcggctcaactcatgaggaggggaagagcaatgcgatcttcgttgggtgtt
gtagctgaagacttgtgcagtagcgatgatgaaagtgtcgcagcatcgccgtcatcgtcg
tacggatatagtaaacaacctgcctcgcctgcaaagcagagggctacgggatctagcagc
agtgacgacgaagtcttggcattggactttcaaagtctctccattgacaagaagaagtct
gatggagacgcattcaacaagaatgattgcgacttttcgacaatcacatcaggcaactca
tcggacgattgctctttgggagacgacgttcaacatctttctggaggattggatgctggt
acgaggcgccaaaatgaaaaggagaacatagagccaagagttgtagcgatggcggtagtc
aagcaaaagaacatcgatgtgtacgatctgtgtttttccccttga
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