Thalassiosira pseudonana: THAPSDRAFT_21370
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Entry
THAPSDRAFT_21370 CDS
T01078
Name
(RefSeq) predicted protein
Organism
tps
Thalassiosira pseudonana
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RCC1
RCC1_2
SBBP
Motif
Other DBs
NCBI-GeneID:
7443063
NCBI-ProteinID:
XP_002287928
JGI:
21370
UniProt:
B8BUZ4
LinkDB
All DBs
Position
2:complement(1503460..1510720)
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AA seq
2256 aa
AA seq
DB search
MSDGNSSQGERQLLPRRKPPIVDHTKRMHALPPIIPKSTTDNSSNLRQNDEQLNSYNLQS
PFYPSATSSTCLNDNAYPSYYLYDIKSYFFKSPRECCERNFGYSVGKKGGGTLRNGGIEE
CLAQIEEYNAIETRIEPLKSQMNMRYGSSSSGGNTGGGGGSSQSKKKSPSKTKKQKTIQK
KQPASQKKPSSRNSDGYFVYSGLPGSKNGQIPPPPMTKPMPKLVLPPLTMSGSKNGQTMM
PPPMNMKPMPPLASWYGSGKADKLPKMMPPPMHKKPLPMMPHWNGSAKSDKVSMMMPPPM
KWTGSVLPKKPLPPMPEWAGSAKSEKYDTMPPKRPPPFYEMPPKRPPPPSLWDGSSSSGK
PMKDTTMSMPPPYWKHPPPPPPGWNHPPPPGWNRSKSSKAKSVKSAKAKSVKSSKSKSAK
GGSVWWNGGSWAGWEDDYTESPTYMPTTSEDEEAWQGSWQGSWWGSGGYWGSASKPGWWG
SGGGGWSDGWGGDPKDPTPSKAPTTPRPTTPKPSNFFPTETYPPTTAFPTYAPSPSMTSN
TYRPTYSPTSGGSSIPTFSPTAGSSADPTPFSSSIAPLDLCVWGSPKSSGQDATDNILVP
LETGSKAIDASAGTKYSVMIDVNGVAYSSGFVEDMDSYHGHLGLRPEDMSSGMNEFTEVT
RVFDDAQGGVTDPPVFEKVFAGVESSLGTASIHTIFLDRRGRVWATGSNSKGQLCLNDDV
DRLIPELIPFEGRRIVDVAIGGEHTLLLDEFGNVYGCGSNEMGQLGLTSSTVATGIPLKL
YLLQSSVSSISAGRDHSLFTAEDGIYVSGSNAFNQLCVDTAGEEILFEPQALNIPIDSIT
SFEAIQFSSFILYVDGSVSACGSNQYGQLGDGTTDEQRPVTTVEIDNVVHHLGAGPSAES
AFFVTEDERVFGTGLNSNGQLGVNDLENRNVPTEVLFDQLVLVHLLSAGSDHTLSLKDST
GEGTPAPSNSSTGTMIPTYSPTSSSYSPTSMPTTYAPTGESLTLFFWGSSESVGEESDED
VAQPLNVGGDTVHSSAGSRYTVIVLKDGSVLSAGLVESINDYQGHLGIDQDAVVEGMNKF
QPVSSFYDSGGELMDTPRFNKVFAGVESTAGDIHTILLDQNGNVYATGSNSAGQLCLGDE
EDRMAPVKIPVDVRIVDVAIGGEHTLLLDEDGNVHSCGSNAVGQLGLGDGTQQTNTPVMV
DGVQSVTSISAGAEHSLFVAGDGIYVTGGNMYGQLCLDSQAQPVVVPEMIDIPIENIVTF
EAIKYSSFVVYIDGSVNGCGKNDFGQLGDASSEDQILTEVQLDNVVRLLGVGPSAESVFF
VADDESVWATGLNDRGQLGVGDFDNRSIATRVMFGEQVMLSVLSASEDHTIALGISLGTL
APTTSASVAPTVAAVIPTGAPSSTEATAAPTQESLNFFFWGAPDSVGQTASIDVLEPLFV
DTGLVYSSAGSKYSLIILSDGSALSAGFIESINDYQGHLGMGDTVTEGINEFKLISVKDE
GSDQTEIEAPRFDKVFAGVESTAGVIHTILLDQNGNVYATGSNSAGQLCLGDEEDRMAPV
KIPVDVRIVDVAIGGEHTLLLDEDGNVHSCGSNAVGQLGLGDGTQQTNTPVMVDGVQSVT
SISAGAEHSLFVAGDGIYVTGSNLYGQLCVDTSGEQVNSPQMIDIPIDEVASFQAIKYSS
FILHSSNGSVNSCGRNDLGALGDSTNDDSPFTVVSIDKIIRLVGVGPSAESVFFVADDES
VWATGLNDRGQLGVGDLDNRNTPTRVMFGEQVMLSVLSASEDHTIALGISKGTLAPTTSA
SVAPTVAAAIPTGAPSSTEATAAPTASTTEPQEATPAPSENPTKAPVTTETTPVPTPAGA
TYPPTTPFPTLLPQIATELYYWGAPESSGQTTSGEVTSPLSGDKVVLDLSAGSQYSLVLL
EDGTVQSAGYIESMDDYHGHLGLKEGDIAEGSNPFQTVSSVFDQENDAILDAPSFTRVIA
GADQETATGSIHSMFIDTDGQVWATGSNAKGELCLGDFDDRLLPTKVAMQGRIIDVAIGA
EHTLLLHEDGSVYSCGSNENGQAGLGESVSNANSPTKIDEIQSPVTSVSAGLEHSLFVAE
DGIYVTGKNTYGQLCIDTNTGNLFVPNVLDDVNVDIVSSFEAIQSSSYILFNDGSLGACG
RNNYGQLGDSTNEDKVRTIVSTIVDEIPIRQLGVGPSANSVFFINDNGYTYSTGLNDRGQ
LGVGDTDNRNALTLVESSQNVVFEHLSASSDHTLSS
NT seq
6771 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacggcaacagtagtcagggagaacgccaactactaccaagacggaaacctccc
atagtagaccatacaaagcgaatgcatgccttgcctcccatcataccaaaaagtactacg
gacaactcaagcaacctacgacagaatgatgagcagcttaacagctataatctacaatca
ccattctatccgtcagcgacatcatccacgtgcctcaacgacaatgcatatccatcgtac
tatctctacgatatcaaatcatatttcttcaagtcgcctcgtgagtgttgtgagagaaac
tttggatacagtgtcggtaagaagggaggtggcacgttgcgcaacggtggtattgaagag
tgtttggcacagattgaagaatacaatgctatagagactagaatcgaaccgttgaagagc
cagatgaatatgagatatggaagtagtagttctggtggaaacactggaggtggaggagga
tcctctcaatcaaaaaagaagtcgccatcaaagacgaagaagcaaaagacaatacaaaag
aaacaacctgcatctcaaaagaagccgtcgagtagaaattcagatggatattttgtctac
tctggattgcctggatcgaagaatgggcaaattccaccacctccaatgacaaaaccaatg
cccaagttggtgttgcctccacttaccatgtctggatcaaagaatggccaaactatgatg
cctcctccgatgaatatgaaaccaatgcctcccctagcatcgtggtatggttcgggcaaa
gccgacaaactgccaaagatgatgcctcctccgatgcacaagaagccattgccgatgatg
cctcattggaatggatctgcaaagtctgacaaagtgtcaatgatgatgcctccaccgatg
aaatggacaggatcggttctaccaaagaaaccattgcctccaatgccagagtgggctgga
tctgcaaagtctgagaaatatgatacaatgccaccgaaaagacctcctcctttttatgag
atgcctcctaaacgccctccgccaccttcgctttgggatggatcatcttcatctggaaaa
ccaatgaaggacacaacaatgtcgatgccgcctccgtattggaaacatcctccaccgccg
ccaccgggatggaatcaccctcctcctcctggatggaacagaagcaaatcaagcaaagcg
aaatcggtcaagagtgcaaaggccaagtcagtcaagagttcaaagtcgaagtctgctaaa
ggaggatctgtttggtggaacggtggtagctgggctggatgggaagatgattacacagag
tcaccaacatacatgcctaccacatcagaggatgaagaagcgtggcaaggaagctggcaa
ggaagctggtggggtagcggaggatattggggaagtgcatcgaagccaggctggtggggt
agtggtggaggtgggtggagcgatggatggggaggtgaccctaaagatcccaccccatct
aaagctccaacaactcctagaccgacaactccaaagccatccaacttctttccgactgaa
acttatccacccacaaccgcgtttccgacttatgcaccctctccatctatgacatcgaac
acatatcggccaacgtattctcctacctctggaggtagctcgatacccacgttctcgccg
actgctggaagctccgctgatccaactcctttcagttcttccattgctcctttggatctc
tgtgtgtggggatctccgaagtcctccggtcaagatgcgacggataatatcctcgtgcct
ttggaaacaggcagcaaggcaattgatgcatcagccggaacgaagtactcagtaatgatt
gacgtcaacggcgttgcttattcttcgggttttgtggaagacatggatagctatcacggt
caccttggattgagacctgaagacatgtccagtggtatgaatgaattcacggaagttaca
agagtctttgatgatgctcaaggaggcgttaccgatcctcctgtatttgaaaaggtattc
gctggagtggagagctctcttggcaccgctagcatccatactatcttccttgatcgtcgg
ggtcgtgtgtgggctacaggatcaaactctaaggggcagctgtgtttaaatgacgacgtt
gatcgtctcataccagaacttattccctttgaaggaagacgtatcgttgatgtggccatt
ggtggagagcatacgttgttgctagatgaatttgggaatgtgtacggttgtggatcaaat
gaaatgggacaactaggattgacgagcagcaccgttgcaactgggattcctctaaagctg
tacctattgcaatcatccgtgagtagtatctcagccgggcgtgatcattcattattcact
gcagaagatggaatttatgtttcgggaagcaacgctttcaatcaactctgtgtggatact
gctggtgaagaaattttgttcgagcctcaagcattgaatattcctattgatagtatcaca
tcttttgaagcgattcagttctcttccttcattctctacgtcgatggctcggttagtgct
tgtggcagcaaccaatacggtcagttaggcgacggaacaacggatgagcaaagaccagtg
actactgttgaaatagataacgtcgtacatcacttgggagcagggccgagtgccgagtca
gcgttctttgttacagaagacgaaagagtcttcggaacagggttgaatagcaatggccag
ttgggcgtgaatgatcttgaaaatcggaatgtgccaaccgaagtactgtttgatcaactg
gttcttgtacatcttttgtctgctggatcagatcatacgctttcgctaaaagattcgacg
ggagaaggaacaccagcaccatcgaacagcagcacgggcacgatgataccgacatattct
ccaacctcttcatcatattctccgacatcaatgccaacaacgtacgctcctactggagag
agcctcacgctcttcttttggggatcttcggagtcggtgggtgaggaaagtgatgaagat
gtggcgcaaccgctcaacgttggaggagatactgtgcattcctcagccggttcacgctat
acggttatagtattgaaggatggttccgttttgagtgctggactggtggaatcaataaat
gattatcaagggcatttaggaatagatcaagatgcagtcgtcgagggcatgaacaagttc
cagcctgtctcaagtttctacgacagcggtggtgaattgatggatactcctcgcttcaac
aaggtgtttgctggagtcgagagcactgcgggtgacattcatacaatactcctcgatcag
aatggaaatgtctacgcaaccggaagcaattctgctggacaactttgtctcggagatgaa
gaggatcgtatggcaccagtaaaaatacctgttgatgttcgtatcgtcgacgttgccatt
ggaggagagcatactttgttgttagacgaagacggcaatgttcactcatgcggatcaaac
gctgttggccagcttggattaggcgacggcactcaacaaacgaacactcctgtaatggtt
gatggagtgcagtccgtgacgagtatttcggctggagctgaacattcattgttcgtagca
ggagatgggatatacgtaacaggaggcaacatgtatggacagctttgcttggacagtcaa
gcccaacctgttgtcgtcccagagatgattgacattccaattgaaaatatcgtgacattt
gaggcaatcaagtactcctccttcgttgtttacattgacggttcggtcaatgggtgtggc
aaaaatgactttggacagttaggtgatgcatccagtgaagatcagattcttacagaagtt
caactcgataatgtcgttcgtctcttaggggttggaccgagtgcagagtctgtattcttc
gttgcagacgatgagagtgtatgggctactggcttgaacgaccgaggccaacttggcgtg
ggagactttgataacagaagtattgcaacaagagtcatgttcggagagcaggttatgtta
agtgtcttgtcagcctcagaagatcacaccattgcgttgggaatatcattaggcaccctt
gctcctacaacgtcagcttccgttgctccgacagtagctgcggtgattccaaccggagca
ccgtctagcacagaagccacggctgcaccaactcaagaaagcttgaacttcttcttctgg
ggtgctccggactcagtcggacaaactgcttccatagatgtcttggaaccactctttgtt
gatacaggtttggtgtactcttctgcaggatcaaagtactcactgatcatccttagcgat
ggatcggccttgtcggctggtttcattgaatcaataaatgattatcaagggcatttagga
atgggtgatactgtcactgagggcattaatgaattcaagctaatttctgtcaaggacgaa
ggaagtgatcaaacagaaatagaggcccctcgcttcgacaaggtgtttgctggagtcgag
agcactgcgggtgtcattcatacaatactcctcgatcagaatggaaatgtctacgcaacc
ggaagcaattctgctggacagctttgtctcggagatgaagaggatcgtatggcaccagta
aaaatacctgttgatgttcgtatcgtcgacgttgccattggaggagagcatactttgttg
ttagacgaagacggcaatgttcactcatgcggatcaaacgctgttggccagcttggatta
ggcgacggcactcaacaaaccaacactcctgtaatggttgatggagtgcagtccgtgacg
agtatttcagctggagctgaacattcattgttcgtagcaggagatgggatatacgtaaca
ggaagtaatctgtatgggcagctttgcgtggacacaagcggtgaacaagtgaattctcca
cagatgattgacattcccattgacgaggtagcgtcatttcaagcgatcaagtactcttca
tttattttgcattcaagcaatggatctgtgaactcttgcggccgaaatgacctgggtgca
ttgggtgactctacaaacgatgattctccttttactgttgtgtcaatagataagatcatt
cgactcgttggagttggaccgagtgcagagtctgtattcttcgttgcagacgatgagagt
gtatgggctacaggcttgaacgacagaggtcaacttggcgtgggagatctagacaacaga
aatacaccaacgagagtcatgttcggagagcaggttatgttaagtgtcttgtcagcctca
gaagatcacaccattgcgttaggaatatcaaaaggcacccttgctcctacaacgtcagct
tcagttgccccgacagtagctgcggcgattccaaccggagcaccgtctagcacagaagcc
acggctgcaccaacagcctctacgacggaaccacaagaagcaacaccggcaccttctgaa
aatcctaccaaagccccagtcacaaccgaaaccactccagtgcccacacctgcgggcgcg
acatacccaccgactaccccttttccaacacttcttccacagattgccactgagctttat
tactggggagcaccagaatcgtcaggacagacaacatcgggcgaagtcacgtctccgttg
tcaggcgacaaagttgtactagacttgtcggctggatcccagtactcactggtactgctt
gaagacggaactgttcagtcggccggctacattgaatcaatggatgattaccacggtcac
ttgggattgaaagaaggtgacatcgcagaaggatcaaacccattccagacagtttcttct
gtatttgaccaagaaaatgatgccatccttgatgctccatccttcactagagtaattgct
ggagctgatcaagagactgctacagggtctatccattctatgttcatagacactgacggc
caagtgtgggcgacagggtctaatgcaaagggagaactttgtctcggcgacttcgacgat
cgccttcttcctactaaggttgcaatgcaaggtcgcatcatcgatgttgctattggagca
gagcacactctgcttcttcacgaagatgggtctgtgtactcatgtggttcaaacgaaaat
ggtcaagctggacttggggagagtgtgagtaatgcaaacagtcctacaaagattgatgaa
attcaatcacctgtgacaagtgtatctgctggtttggagcattcgttatttgtggcagag
gatggaatttatgttactggaaaaaacacgtatggccaactgtgcattgatacaaacact
gggaatctctttgttccaaacgttctcgatgatgtcaatgttgacattgtgtcttcattt
gaagccattcaatcatcgtcgtacatcctattcaacgatggaagtttaggagcctgtggt
agaaataactacggtcagcttggagactctacaaacgaggacaaagtgagaacaatagtc
tccactatcgtggacgaaataccaatacggcaattaggcgttggtccaagtgcaaactca
gtcttcttcatcaatgataacggatacacttacagtacaggcttaaatgacagaggacag
ctcggtgtaggtgatacagacaatagaaatgcattgacgttagttgagagcagtcagaat
gtggtctttgagcatctatcagcatcaagcgatcatacactttccagctaa
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