Thalassiosira pseudonana: THAPSDRAFT_21462
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Entry
THAPSDRAFT_21462 CDS
T01078
Symbol
rpoT
Name
(RefSeq) rpot-like RNA polymerase
KO
K10908
DNA-directed RNA polymerase, mitochondrial [EC:
2.7.7.6
]
Organism
tps
Thalassiosira pseudonana
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03029 Mitochondrial biogenesis [BR:
tps03029
]
THAPSDRAFT_21462 (rpoT)
Enzymes [BR:
tps01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
THAPSDRAFT_21462 (rpoT)
Mitochondrial biogenesis [BR:
tps03029
]
Mitochondrial DNA transcription, translation, and replication factors
Mitochondrial transcription and translation factors
Mitochondrial RNA polymerase
THAPSDRAFT_21462 (rpoT)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol
RPOL_N
DUF7604
Motif
Other DBs
NCBI-GeneID:
7452320
NCBI-ProteinID:
XP_002287475
JGI:
21462
UniProt:
B8BVD8
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Position
2:1879297..1883223
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AA seq
1217 aa
AA seq
DB search
MHIIISKISCRQLSSVVSPKPFYEHEDDEDENHTDDQGDGDQIQWIRQAPRMDNYSKYDN
FSQYSSPSFGERRYGEEESLLQLLKKDLDTKPNCNVPHGQPHSRDNQSRLPEDHGEESLL
GLLNGGQVEIDRGGQPRHAGREEESLLDLLNNETGMDYKPSSNFTENGENGIHRGSQPTD
DSGDESLFRLLNGVATNENAPFTYPTTNGQHDTLQYPQPYEAEEHKEESLVGLLNEEFTR
HSTDKYKELRRLQLQLEIESTEEAVMKCLSTWNSARDRSDHTTIPAIRKVVTSWYGSLTE
AIELEQWLYLNGDNKTSSSSQLDTQSGEDGGESTNSNGLQKTDVARDRTIYGPLLCLLPP
QKTAILLAHTALSCSVAGGELGSKVVSLAIYIAQALETEVNVSRALRVRASQRKWKMNNL
EDEGDEVDGVVQMSTKPPNGSDSLSDNITVDKWVYTATHLKRFLDELSGNGATSGDQKPL
KGQGRLRPALVRKRCQDILLAEGFMGEGDDDGTTAPKRPISLTDFAEWDPVLKVKLGAAL
IRLLLEHTSFSKRRGSSPEPAFFYSRKKTGEMKFNGFVTIHPELLKIAMKEELSHDSSFI
SPRYMQNTRCQPMVVPPKDWKAVDDGGYETIKTEFMRTRHCKTQKDAIRHADLTQVFEGL
NVLGRIPWKINQNVLDAACKCWDDGIALGDIPSQDNHQVPPLPTPLDYRDFNLLDDDEKK
VQVDAFRIYKDAITKHFRFKQKNMDLHSLRCSAMLKLNQAKKFRDFEEIFFPYNVDFRGR
AYPVPPHLSIVGSDLCRALLMFAHPKPLGPNGLYWLKVHLANLAGANKMSFDGRAQFADD
NMESIRAAVDNPFGGNDWWMGFDDPFQGLATCHEIVKAIDSGDPANYMCSLPVHMDGSCN
GLQHYAALGRDKVGGKAVNLCIADEPQDVYIGVMHEVIRRVAEDAQEMLPFDETKADLTK
AEKELMKKIKSARLVNGLIDRGVVKRTVMTSVYGVTYIGARNQISEKIEEKLEDKGYDID
EMEAEINMACGYLASLTMEVMGQLFTGARQTMNWLTACARLIAQQGQPVAFVSPVGVPVV
QPYRQKRPFTVVTLLQNVVLSNDSDVLPLHRQRQVSAFPPNYVHSLDSSHMLLTAIEMQK
RGLHFSAVHDSYWTHPCDVEEMNDILRECFIDLYSQPLLEDLKDSWELRYPSITFPDVPT
KGELDLNDVKSAPYFFQ
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgcacatcatcatatctaagatttcatgccgacaactctcttcagtagtaagcccaaag
cctttttatgaacacgaggacgacgaagacgaaaatcatactgatgatcaaggcgatggc
gatcaaatacaatggatacgacaggcaccaagaatggataactactccaagtacgataac
ttttctcaatattcctctccttcttttggggagagaaggtacggagaagaggaatcgttg
ctacagctactcaagaaggacttggacacaaagccgaattgcaatgtgcctcatggtcag
ccgcacagcagagataatcagtcaagactaccagaggatcacggggaagaatcgttgcta
ggtttattgaatggtggtcaagtcgaaattgataggggtggtcaaccaaggcatgcagga
cgtgaggaagaatcgttgctggatctcttgaacaatgaaactggaatggactataagcct
tcatctaactttactgagaatggcgaaaatggtattcatcgtggaagccaacctacggat
gacagtggagacgaatcattgtttcgtcttttgaatggagtagctacgaacgaaaatgcc
ccattcacttaccccacaacaaacggacagcacgatactctccaatacccacaaccatat
gaagccgaagaacacaaagaggaatcactggttggtctcctcaacgaagaattcacccgc
cattcaaccgacaaatacaaagagttgcgaagacttcagctacaattagaaatagaatca
accgaggaagcagtgatgaagtgcttatctacgtggaactcggcgagggacagatcagat
cacaccacaattcctgcaataaggaaagtggtcacgtcgtggtatggatcgttgactgag
gcaattgaacttgaacagtggctatatctcaacggggacaacaaaacgagttcatccagt
caacttgatacacagtcaggagaagacgggggagagtcaactaacagtaacggattgcaa
aaaactgatgttgcgagagatcgaacaatctatggccctttgctttgccttttacccccg
caaaagacagcaatattgctcgctcacacggcattatcttgctccgttgctggtggagag
ttaggttccaaagtggtttcactggcgatttacattgctcaggctttggagacagaggtt
aacgtttccagggctttaagggtgcgagcaagtcaacggaaatggaagatgaacaacctt
gaagatgaaggagacgaggtagacggagtagtgcagatgtcaacaaagcctcccaatggc
agcgacagtctttccgacaatatcactgttgataagtgggtctatacagcaactcatttg
aaacgattccttgacgaattatcaggcaacggggcaacttcgggtgatcagaaaccactg
aagggtcaagggcgtcttcggccagcattggttcggaaacgctgccaagatatactttta
gctgagggatttatgggagaaggagacgacgatggaacgaccgctcctaaaagacctatt
tcgttgactgactttgctgagtgggatccagttctcaaagtcaaactcggtgcagcactg
attcgtttactattggagcacacatcattttctaaacgccgaggtagttcgccggaacca
gctttcttttactcaaggaagaagacgggggaaatgaaatttaatggattcgtcactatt
catccggaactactcaaaattgcaatgaaggaagagctatcgcacgattcgtcatttata
tcaccacgttacatgcaaaacacaaggtgccagcctatggtggtaccacctaaagattgg
aaagccgtcgatgatggtggttacgaaaccataaaaacagagttcatgagaacgaggcat
tgcaaaacacaaaaggatgctattcgccacgccgatttgactcaagtgttcgaaggactg
aacgtcttgggtagaattccttggaagataaaccaaaatgtactggatgctgcatgcaag
tgttgggatgatggcattgccttgggtgacataccatcccaagacaatcatcaggtgcct
ccacttcctactcctcttgattatagggattttaatttacttgacgacgatgaaaagaaa
gtgcaggttgatgcatttcggatttacaaggatgcaataacaaaacactttagattcaag
caaaagaatatggacttgcacagcttaaggtgttccgcaatgttgaaattgaatcaggca
aagaagtttcgcgactttgaggagatattctttccttacaatgttgactttcgtggacgt
gcgtatcctgtgcctcctcatctttcaattgtcggctctgatctttgcagagcacttctc
atgtttgcacatccaaagccactcgggccaaatgggttgtattggttgaaagtgcatctt
gctaacttggctggtgcaaacaaaatgtcttttgatggacgtgctcaattcgccgatgat
aatatggagagtattcgtgcagctgtcgacaacccattcggagggaatgactggtggatg
gggttcgatgatccgtttcaagggctagcgacttgtcatgaaatcgttaaggcaattgat
tctggagaccccgcgaactatatgtgctctcttccagtgcacatggatggatcatgcaac
ggattgcaacactatgctgcacttggccgggataaagttggtggcaaggctgtcaatctt
tgcattgcagacgagcctcaggacgtctacatcggagttatgcatgaagtgattcgacgt
gtagcggaggatgctcaagagatgctgccatttgatgaaaccaaggcggacctgactaaa
gctgagaaagaactaatgaaaaagataaagtcggctaggctcgtcaacggtttgattgac
agaggtgtggtgaagaggacggtcatgacttcggtgtatggtgtcacttacattggagcc
cgaaatcaaatcagtgaaaagattgaagagaagctagaagacaaggggtatgatattgat
gaaatggaggcagaaatcaatatggcatgtggatatctagcatctttgacgatggaggtg
atggggcagcttttcactggagcacggcagactatgaactggctaactgcgtgtgcccga
ctgattgctcagcagggacaacctgtcgcttttgtttctccagtgggtgttcctgtggtt
caaccgtacaggcaaaaacgaccatttactgtggtgacgcttcttcagaacgttgttctg
tcaaatgactcggatgtgcttcctttgcatcgtcagcgtcaagtgagtgcctttcctccc
aattatgtgcactctttggactcctcgcacatgctattgactgcaattgagatgcaaaag
cgaggtcttcacttctcggccgttcacgattcatactggacgcacccgtgtgatgtcgaa
gagatgaatgacattcttcgggagtgctttattgacttgtactctcaaccgcttctcgag
gatctcaaagactcatgggaactgagatatccatcgataacattccccgatgttccaacc
aagggtgaattggatctgaacgatgtcaaatcggcaccttatttctttcagtga
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