Thalassiosira pseudonana: THAPSDRAFT_21498
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Entry
THAPSDRAFT_21498 CDS
T01078
Name
(RefSeq) atp-dependent RNA DEAD/DEAH box helicase
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
tps
Thalassiosira pseudonana
Pathway
tps03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
THAPSDRAFT_21498
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tps03019
]
THAPSDRAFT_21498
03036 Chromosome and associated proteins [BR:
tps03036
]
THAPSDRAFT_21498
Enzymes [BR:
tps01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
THAPSDRAFT_21498
Messenger RNA biogenesis [BR:
tps03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
THAPSDRAFT_21498
mRNA degradation factors
5'-3' decay
Decapping complex
THAPSDRAFT_21498
Chromosome and associated proteins [BR:
tps03036
]
Eukaryotic type
Gene silencing
piRNA pathway
THAPSDRAFT_21498
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
ERCC3_RAD25_C
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
7452354
NCBI-ProteinID:
XP_002287508
JGI:
21498
UniProt:
B8BVK5
LinkDB
All DBs
Position
2:2072585..2074187
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AA seq
416 aa
AA seq
DB search
MTSVQSANKETVTGTGTYKDGLTAPKKDERYKTEDVTQTKGRDFEDFFLKRELLMGIFEK
GFEKPSPIQEEAIPIILQNRNVLARAKNGTGKTAAYIIPCLEKTDTTQTYVQVLILIPTR
ELALQTSAIVKEIGKHMGIQCMVTTGGTSLKDDIMRLYNSVHIIVATPGRILDLASKKVA
DLSKCRTIIMDEADKLLSTEFQPVLEKIIDLCDKKHQICLFSATFPVTVKEFCQKFVPNP
YSINLMDELTLRGITQFYAYVEERQKVHCLNTLFSKLEINQSIIFCNSVNRVELLAKKVT
ELGYSCYYIHAKMQQANRNRVFHEFRNGATRHLVTSDLFTRGIDIQSVNVVINFDFPKNA
ETYLHRIGRSGRFGHLGLAVNLITYDDRHALRRVEQDLGTEIRPIPAVVDRSLYVG
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
atgacatccgtacaatcagcaaacaaagaaacggtcaccggcacgggaacctacaaagat
ggtctcactgcccccaaaaaagatgaacgttacaagaccgaggacgtcacgcaaaccaag
ggacgagactttgaagatttcttcctcaagcgagagctcctcatgggtatattcgagaag
ggatttgaaaagccttctcccattcaagaagaggccattcccatcattctgcagaatagg
aatgtcttggcccgagccaagaacgggacggggaagacggctgcgtacattatcccctgc
ttggagaagacggatactacgcaaacctatgttcaggttcttatcctcatccccacgagg
gagcttgccttgcaaacatcggctattgtcaaggagattggaaagcatatggggattcag
tgcatggttactacggggggaacgtctctcaaagatgatatcatgcgtctctacaactcg
gtgcacattattgttgccacccccggccgtattcttgacttggcctcgaaaaaggttgcg
gatcttagcaaatgccgcaccatcatcatggacgaggccgacaagctcctctctacggag
tttcaaccggtccttgaaaagatcattgatctctgtgacaagaagcatcagatttgtctc
ttcagtgccaccttccccgtaactgtgaaggagttctgccagaagtttgtccccaacccc
tactccatcaatcttatggacgaactaaccctccgtggtatcacccaattctatgcctac
gttgaagaaaggcagaaggtccactgcctcaacaccctcttctccaagctggagatcaac
cagtccatcatcttctgcaactccgtcaaccgcgtggagctcctcgccaagaaggtcacc
gaactgggatactcgtgttactacatccatgccaagatgcagcaagccaaccgtaaccgc
gtcttccacgagttccgcaacggtgccactcgtcacctcgtgacttcggatctcttcact
cgtggtattgatatccagagtgtgaatgtggtcatcaactttgatttccccaagaatgcc
gagacctacctacatcgtattggacgttcaggaaggttcggacacttgggtctggcagtg
aacttgatcacgtacgatgatcgacatgccttgaggagggtggagcaggatttggggaca
gagattcgtcctatccctgctgttgttgatcgtagcctatacgttggatag
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