Thalassiosira pseudonana: THAPSDRAFT_21602
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Entry
THAPSDRAFT_21602 CDS
T01078
Name
(RefSeq) predicted protein
KO
K14794
ribosomal RNA-processing protein 12
Organism
tps
Thalassiosira pseudonana
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tps03009
]
THAPSDRAFT_21602
Ribosome biogenesis [BR:
tps03009
]
Eukaryotic type
90S particles
Other 90S particles
THAPSDRAFT_21602
Pre-60S particles
Other pre-60S particles
THAPSDRAFT_21602
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRP12_HEAT
XMAP215_CLASP_TOG
Motif
Other DBs
NCBI-GeneID:
7442450
NCBI-ProteinID:
XP_002288156
JGI:
21602
UniProt:
B8BWU5
LinkDB
All DBs
Position
3:138038..146024
Genome browser
AA seq
2427 aa
AA seq
DB search
MARSRSGSHASRATMASTRSMQSAYTTSTTITQSFASPSLGTSSIDHHQYSLPYQPHTTQ
DNVSMLNSLLADLQSVSSDRNAVRLAACCAALVETAGETRRKASTNDGSSSSGSAGGEVT
PNEMFVTTLGALSSLQTAIEAKQQQGANDADGSGEYDVSSDLENTALPLLEILRRILPFA
VHVSNNGGALLAHQFGTLSRMLRLFVALGYAMPNNNSTNNNGGSKKSRKSNNNGGGATAG
ANALLRQLLKTSTTLLLLSPSSVSEKELAKLLHGTIVPMLHDGRPKVRKAGWGCAMEIVM
VASSSTGSNSSTGMGEEADTMQNETTTQLQLKIQQQRKGIADFLWEYCNAITTNYSTGKR
VDKDTSSKLVHVLRFLAAALPFADDERIRVKFGEGCLVLMSGGGGGGGDGSGSKKGKKSA
IADSTGGEVSMEVVRETLMTLLACLEFTEQEQATTIVGGTGKKSATEEGELPKFAARTLA
FLLQHRPNSANSSYSSAGDVSVVYGRCLLACMERMMGDGGNNSINGNDVPASRLLATKLL
PNVLTSMLHLCEAPSGSTDGGSDNAESCGSEFNQFISRMMPVITSFVTGDNDKLKRVALE
VIPQCIPMVQQALQIQYRNAWGSILPGGYATFTSSLAMVLLELNALEDGGGAAENGDDVS
ELENNLQSWLKTLVLSLLRLRRDVEKDNTARTAVEYATSTVIRGMGVELFLSLVDFVDDD
DDDDEGKQSKKKSLPTTTGGGIRDDRAWLLPLMKQSTTSSSETSLSSLASSATVKTHLSF
FQGRVLNLARRCDAASADGHRTAAEASIQRSRVVELWALFPTFCLHPLDVKENFAALAKT
VVKALGDHSRYPKLIGIICGGLKTLAVGIMERKEANSSPNAKVNYDVLSNVSTKILPSLF
KLVESLNNQSTTPTKSSEGDDMETDETPSNGTESNSQQNMQLVESVTDSIGKLAQVCPPE
FLQNLFKKVVQRLLVATTESTESMDDKEGKSLNDLRMCSLLGLGQALVASGSLDEASLSL
LYRAIRPLVRTDEHDSRVQKRSYKVLAEICERHKDFVTSSERLGEMMDLMVDSIVTCQVS
ARHMRLKCMALIVEGFDSSNEAHMLMESNTLLVMCSCQAVIPKIMGEVLLCLKDSNAKTR
EASYQLLLAMATSRDDMTDFFTIILAALGAQTSHMRSAAVMAISRLSFEYSRTDDTVQSL
LPSLLQTVTVLFDEDSREVTKSVIGFVRVCVAAMTADQLEPLLPEVVGGLMKYNKGRDRF
RSKIKIILKKLVRVYGFDAIAPLVPEKDTRLINHMRKLSERAARRKAAGTQDGRSVHAGF
DDMMESDEDDSDDGRTFMTGVTGFTKMTSMTGKTTKRSAMDKSIKSGKSAMTGARTAMTG
RSAKEGGGPRIRAEQDGEILDMLDSSKMARSVHFADMDMNDRDFSDDDDGEDMQFDNQGR
IVISDGLPKELGRNTSVNDEYDSDDVEENMELKAGGGKRRRVSKFESVKLAKQAEMAAVA
SRKKAKSQQKQQPGIGAAYKSKKAGGDVRKKGQQYEPYAYVPLNAKDYTKKNREGAVSKM
GTVVRNNKRRRGPKAATHDLNNETVVSGITVNSYHTSKKVWSTSRGSDSSGMMMMQGISE
GTDAEDHQCQPHEQDTAHESQFQQQQQQQQCDSSSSMRSRGSGGENEFHNQPQHHFQPNT
AAVGLSSSYRSNDGSHSFRWGSFQGGSRGDDNMRGGRGGSMRGSGNSATSSFGAAAAAAQ
CQNSMHGSSSYSTSHHHRRQQQTPLVFAQQSKTSATQEINVSNIDFIVEADELDSLPGSY
KNGYTNEDNILLFQRKNNVPDIISEDLSKSKDAEYEILPVDVNEEEKSPFSLRRRYYSAV
TIVMAVALAVVGICLAVEVFSTDPKKYGVLDAQDSVESSSGYGSRYGRNNHDGRDSEYFY
LPRHQFGGGNGGLLGGKERERRMDLMYNRFGANIVGYGEEDPGLLSRLQDAAGGYSPERS
GSILIGSGSKRAFGVGQRDPDPFSGIGPPQFNPAYNEVNSLSQEDAFKATLTSVPLTSYS
PPSNNENGSGSSSTPKVLDPIFHGSMMDLSVLPYNPIREVPVVWDIPLSGGSRIQSILGN
CLKMVQCSEVGRDVLLNEYQESQTAAGDVEEGRRFLKGSKFVNGERELGESELGMDDGKK
QTSEAAFETSTESVDLSSFNPPLKSEFVYTSAYINVDCSTSEGVNRGIAHDLATADMVDI
VYSPSIMDVARLFAPPVEAYGRAVVLIRHPLERTVAIFEYLRMAHYDDRSKVVEEMNLGE
FAKSDLVENNFLTRSLSGNANTPLREEDLVLAKEILKRKFIIGLFEEMPESMRRFEMFFG
WNLNVDAQVCQANEIGRELAGYYNMFAKLSGPDEPKDTHPGLTDEALESIIQKNSIDLML
FDYAKFLFGYQGRVLFGVDAELDDSSR
NT seq
7284 nt
NT seq
+upstream
nt +downstream
nt
atggcaaggtcaagatcaggcagccacgcctctcgagcaacaatggcctccaccagatcc
atgcaatcagcctacaccacctccacaaccatcacccaatcgttcgcctctccatcactc
ggcacttcctccatcgaccaccatcaatactcactcccataccagccgcacactacgcaa
gataatgtatctatgttgaattcactattggctgatttgcaaagtgtcagtagtgatcgg
aatgcagtgaggctggcagcgtgttgcgcggcgcttgtggagactgccggtgagactcgt
agaaaggcatccaccaacgacggcagcagtagcagcggaagcgcaggaggagaggtgact
ccaaatgaaatgttcgtaactacattgggagcactgtcctctcttcagaccgctattgaa
gcgaagcagcagcaaggtgctaatgatgctgatggaagtggagagtatgatgtctcgtcc
gacttggagaatacggcgttgccattgttggagattctgaggaggatattgccatttgca
gttcatgttagcaataatggtggtgctctgttggcacatcaatttggaacattgagccgt
atgctccgtctctttgttgccctcggatacgccatgccaaacaacaactccactaacaac
aacggaggctccaaaaagtctcgaaagagcaacaacaatggtggcggcgctacagcagga
gccaacgccctcctccgtcagctactaaagacgtccaccacacttctccttctctcaccc
tcctccgtatctgaaaaggaattggcaaagttactccacggaacgatcgtaccaatgctt
catgatggtaggccaaaggtacgaaaggctggatgggggtgtgccatggagattgtaatg
gttgcctcttcttctaccggaagcaatagtagcacaggcatgggagaagaagcagatacc
atgcagaatgaaacaaccacacaactccaactcaaaatccaacagcaacgcaaaggaatc
gctgactttctatgggagtattgcaatgccattacgaccaactactctactggaaaaaga
gtagacaaggatacatcatcgaaacttgtgcatgtgttgcggtttttagcggcagcgttg
ccatttgcggatgatgagaggattagagtcaagtttggtgaggggtgtttggtgttgatg
agcggtggtggaggaggtggtggtgatgggagcggtagcaagaagggaaaaaagagtgca
attgcggacagtactggaggagaggtgtcgatggaggtcgtacgggagacactaatgact
ctattggcgtgcttagagtttacagaacaagaacaggcaacgacgattgtgggcggcacc
ggaaagaagagtgctaccgaagaaggagagttgcccaagtttgcagcgcgtacattggcc
ttcttgctacaacatcgtcccaacagtgccaattcttcgtattcctctgcgggagatgtc
tctgtagtgtacggacggtgtttgttggcttgtatggagagaatgatgggcgatggaggt
aacaacagcatcaatggaaacgatgtgccagcctctcgtttgttggccacgaagttgcta
cccaacgtattgacttccatgctgcacctctgcgaagctcccagcggcagtaccgacgga
ggatctgacaatgccgaatcgtgtgggtcggaattcaaccagttcatctcgcgaatgatg
cccgtgatcacttccttcgttactggtgacaatgacaagttgaaacgtgtagcattggaa
gtgattcctcaatgtattcctatggtgcaacaggcgctgcaaattcagtatcgcaatgct
tggggatccattttgccaggggggtatgctacgtttacctcttctttggcaatggtgttg
ttggagctcaatgctttagaggatggaggtggtgctgctgagaatggcgatgacgtttct
gaattggagaacaatctacaatcgtggctcaagacattggtgttgtctctacttcgtctt
cgccgtgacgttgagaaggacaacactgctcgaactgccgttgagtatgcgacttcgact
gtcatccgagggatgggagtggaactattcctttcgttggttgatttcgtagacgacgat
gatgatgacgacgagggaaaacagagtaagaaaaagtcattgccgactaccactggaggt
ggcattcgtgatgatcgtgcatggttgctgccgttgatgaagcaatctacaacatcttcc
tcggagacatcattgtcatcgttagcttcctcggcaactgtcaagacacacctttctttc
ttccaaggaagagttctcaatctagcacgacgatgtgatgcagcttcggcagatggacat
cgtactgccgcagaggcttccattcagagatcaagagtagttgagctctgggcactgttt
cccactttctgcctccatccgctagatgtgaaggagaactttgctgctttagcaaagact
gtggtgaaggcattgggggatcactcgcgttatccaaagttgattggcatcatttgtggt
ggtctcaaaacgttggcggttggtatcatggaaagaaaagaggcaaacagctcgcctaat
gccaaagtcaattacgatgttctatccaatgtgtctacgaagattcttccttccttattc
aagttagtcgaaagtttgaacaaccaatccacaacgccaacaaagtcatctgaaggagat
gatatggagacagacgaaactccgtcaaacggaacggaatccaatagtcaacagaacatg
caactcgtagaatccgtcactgattccatcggcaagctcgctcaagtatgtccacctgaa
ttccttcaaaacctattcaaaaaggtagttcagcgtctcctagttgcaacgacggaatcc
accgagagtatggatgacaaagaagggaaaagcttgaacgatcttcgtatgtgttcgctt
cttggtcttggacaagctctcgttgcttcaggctcacttgacgaggcaagtttgtcattg
ctctacagagccattcgaccattagttcgtaccgatgaacatgattctcgtgtccaaaag
agatcttacaaggtattggctgagatctgtgaacgtcacaaggattttgtgacttcgagt
gagaggctcggcgaaatgatggatctgatggtggattctattgtcacgtgccaagtctct
gcacgtcacatgaggctgaaatgtatggcactcatagtggaaggctttgattcctccaat
gaggctcacatgctgatggagtctaacactttgctcgtcatgtgctcatgccaggctgtc
attcccaagattatgggagaggtgcttctttgtctcaaagattccaatgcaaagacgaga
gaagcctcgtatcaattgcttctcgccatggcaacttctcgagatgatatgactgacttc
ttcacaatcattcttgctgcgttaggagcacaaacttcgcacatgcgatcggctgcagtc
atggctatctctcgtctctcctttgagtattcacgtaccgatgatactgtgcaatcttta
cttccatcgctgttgcagacagtgactgttcttttcgacgaagattcacgcgaggttacc
aaaagtgttatcgggttcgttagggtttgtgttgccgccatgacggcagatcaactggag
ccgttgcttccggaagttgtgggcggactgatgaaatacaacaagggaagagaccgattc
cgatccaagatcaagattatcttgaagaagcttgtgcgagtgtatggattcgatgctatt
gcacctttagtccccgagaaggatactcgtttgatcaaccatatgcgtaagttatccgag
agagcagctcgtagaaaggctgctggaacgcaagatggacgttctgtgcatgctggattt
gacgacatgatggagtctgatgaggatgattcggatgacggaagaacattcatgacaggt
gttactggatttaccaaaatgacgtcaatgacaggaaagacgacgaaacgatctgccatg
gataagagcattaagagcggaaagagtgccatgacgggagcaagaactgcaatgactggc
agaagtgcaaaggagggtggcggtcctcgtattagagcagagcaagatggagagattctc
gatatgcttgattcttccaagatggcaaggagtgtacattttgctgatatggatatgaat
gatcgtgactttagtgatgacgacgatggcgaagacatgcagtttgacaaccaaggaagg
attgtcattagcgatggactgccaaaggaacttggcagaaacacttctgtcaacgacgag
tatgattctgatgatgtagaggagaatatggaactgaaagcaggaggaggcaaacgtcgt
cgtgtgagcaagttcgagagtgtcaaactagccaaacaagcggagatggccgctgtcgct
tcgagaaagaaggcaaagagccagcagaagcaacagccaggaattggagctgcatacaaa
tcaaagaaggctggtggagacgtgaggaagaagggacaacagtacgaaccgtacgcctac
gttccgttgaatgccaaggattatacgaagaagaacagggaaggcgcagtatcaaagatg
gggactgtggttcgcaataacaaacgtagaaggggaccgaaagctgccacccatgacctc
aacaacgaaacagtagtgagtggaataacagtcaactcgtatcatacgagtaagaaggta
tggtcaacatcacgaggtagcgacagcagtggaatgatgatgatgcaggggattagcgaa
gggacggacgcggaggatcatcaatgccagccgcatgagcaggatactgcacacgaatct
cagtttcaacagcaacaacagcagcagcagtgtgacagtagtagcagcatgcgttcccgt
ggaagcggaggagagaacgagttccataatcagccccagcaccactttcaaccaaataca
gcagcagtcggattgtcaagcagttatcgcagtaatgatggcagtcattccttccgctgg
ggaagctttcaagggggcagccgaggcgacgacaacatgagaggaggcagaggggggagc
atgagaggcagtggcaacagcgccacttcatcgtttggagctgccgctgcagcagctcaa
tgtcaaaacagtatgcacgggtcctcgtcgtattccaccagtcatcatcatcgacgccaa
caacaaactccattggtattcgctcaacagtcgaaaacatcggcaactcaagagatcaac
gtgtccaacattgacttcatcgtagaagcggatgaattggattctcttcccggcagttac
aagaatggctacaccaatgaagacaacatattattgttccaacgaaagaacaacgtgccc
gacatcatctcggaggacctatccaagtccaaagacgcagagtatgagatactccctgtt
gacgtcaatgaagaggagaagagtccattctcattgagaaggaggtattactctgcagtc
acgatagtcatggcggtggcattggctgttgtggggatttgtttggccgtggaggtgttt
tcgactgatcctaagaagtatggggtgttggatgcgcaggatagcgttgaaagttcttcg
ggctatggtagtcgttacggaagaaacaatcacgatggacgtgactctgaatacttttac
ctacctcgccatcaattcggaggggggaacggaggattgctcggtggtaaagaacgagaa
cgaagaatggatctaatgtacaatcggttcggtgccaatattgttggctatggggaggaa
gatcctggattgctatcacgattacaagatgctgctggtggttattcgcccgaacgaagt
ggtagtattcttatcggcagcggaagcaagagagcgtttggagttgggcaacgagatcct
gatcctttctcggggattggaccaccgcagttcaacccggcgtataatgaggtcaattcg
ttgtcccaagaagatgcattcaaggcaacacttacttcggtaccgttgacttcgtattct
cctccctcaaacaatgagaacggtagtggttcttcctcaacaccaaaggtgctggatcca
atttttcatggatccatgatggatctctccgtcttgccttataaccccatccgtgaagtg
ccagtggtgtgggatattccactctcaggtggttcacgaatccaatctattcttgggaac
tgtttgaagatggttcaatgttcagaagtggggagagatgtattgttgaatgagtatcaa
gagagtcagactgctgctggtgatgtagaggagggaaggaggttcttgaagggatcaaag
tttgtgaacggtgaacgggagttgggagagagtgagttgggaatggacgatgggaagaag
caaacatcagaggcagcctttgaaacatctacggaaagcgttgacttgagctcgttcaat
cctccactcaagtccgagttcgtctacacatcagcctacatcaacgtcgactgttccaca
tccgaaggagtcaaccgtggcattgctcacgaccttgccaccgctgacatggtagatata
gtctactcccccagcattatggatgtagcacgactctttgcacctccggtggaagcatat
ggcagggctgtggtgttgatcagacatccattagagagaacggtagcaatatttgagtat
ctaagaatggctcattatgatgataggtcaaaggttgttgaagagatgaacttgggggag
tttgctaagagtgacttagtcgagaacaacttcctcacaagaagcctatctggcaatgca
aacacgccactcagagaagaagaccttgtactcgcaaaggagatactcaaacgcaagttc
atcattggactctttgaagagatgccagaatccatgagacgctttgagatgttctttgga
tggaacctgaatgtcgacgcccaagtatgccaagccaatgaaattggcagagaactggct
ggatactataacatgttcgccaaactcagcggccctgacgaacccaaagatacgcaccct
ggtctcaccgatgaagccttagaaagtatcatccagaagaatagcattgatttgatgctg
tttgactatgccaagttcttgtttggttatcaagggcgtgtgctgtttggggttgacgca
gagttggatgattcatcgcgatag
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