Thalassiosira pseudonana: THAPSDRAFT_21706
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Entry
THAPSDRAFT_21706 CDS
T01078
Name
(RefSeq) predicted protein
KO
K03679
exosome complex component RRP4
Organism
tps
Thalassiosira pseudonana
Pathway
tps03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
THAPSDRAFT_21706
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tps03019
]
THAPSDRAFT_21706
Messenger RNA biogenesis [BR:
tps03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
THAPSDRAFT_21706
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
THAPSDRAFT_21706
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRP4_S1
KH_6
ECR1_N
DUF6459
Motif
Other DBs
NCBI-GeneID:
7441710
NCBI-ProteinID:
XP_002288781
JGI:
21706
UniProt:
B8BXI9
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Position
3:complement(739195..740434)
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AA seq
403 aa
AA seq
DB search
MAAHLRHHFVLPGQVLATSNAETDGGFLRGHGTFIELVQEDDDDNDEHDIDDDGISSGGM
AGTSKKKRAKGSGWGYSEKSDVVMQTHDAKNSDDENDKSGDEEEENTTLTKGPQRLIASV
AGTVERVNKLISVIPISPSIYVGQVGDLIVGRIVGVGGSRWKVSLTCSPLTSSASNGSMK
EGQLPLSGVNLPGGVQRIRTSEDVLAMRSLFKEGDLLTCEVQNVQKDGTLILHTRSLRYG
KLDNGVLVTVPPSLVGRRKNHFVTLKGMVAGKNTDDNGMDVDGEEEETGDVDVYLGLNGG
IWIQRTVPPKWENAIRADQDERAPLAETLQKLRQRHATTRVSPSMREGIARVRNSIECLR
LVHCQITPDTIEIVARASVDARVRVAEMLLPEWVVKLTEGTRR
NT seq
1212 nt
NT seq
+upstream
nt +downstream
nt
atggcagctcacctccgccaccactttgttctaccaggccaagttctagccacatccaac
gcagagactgacggtggattccttcgaggccacggaacgttcattgaactcgtgcaagaa
gatgacgacgacaacgacgaacacgacatcgacgatgatggcatttcctccggtggaatg
gctggcacctccaaaaagaagagggccaagggatcaggatggggatacagcgaaaagtcc
gatgtggtgatgcagacgcacgatgctaaaaattcagacgatgagaacgacaagtccggt
gacgaggaggaagagaatactactctcaccaaaggaccgcagcgcctgattgcttcagtg
gctggtaccgttgaacgagtcaacaaactcatcagcgtgattccaatttcgccatcaatc
tacgttggacaagtgggtgatttaatcgtagggcgaatcgtcggtgtgggaggttcacga
tggaaggtcagcctcacttgctctccgcttacatcgtcggctagcaacggaagtatgaag
gaggggcaattgccattgagtggagtcaacctccctggaggtgtgcaacgtattcgtacc
tcggaggatgtgctggcgatgagaagtctattcaaagaaggggatttgctaacatgtgag
gtacagaatgtgcagaaggatggtacgctgatcttgcatacgaggagtttgaggtatgga
aagttggacaatggagtgttggtgacggtacctcctagtttggtggggaggaggaagaat
cattttgtaacgttgaagggaatggtggcgggaaagaatacggatgacaacggtatggac
gtagatggcgaagaagaagagaccggagacgttgatgtgtatctcggcttgaacgggggg
atctggattcaacgaacggtacccccaaagtgggagaatgcaattcgcgcagatcaagat
gaacgtgctccacttgccgaaacactacagaagctccggcagcgacatgcaacaactcgc
gtatctccttccatgagagaaggtatcgcacgagttagaaactcaattgaatgtttgagg
ttggtacattgccagattaccccggatactattgagattgtggcgagagcaagtgtggat
gcgagagtgagggttgctgagatgttgctacctgaatgggttgtcaagttgacagagggc
actaggcgttag
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