Thalassiosira pseudonana: THAPSDRAFT_21860
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Entry
THAPSDRAFT_21860 CDS
T01078
Name
(RefSeq) predicted protein
KO
K12821
pre-mRNA-processing factor 40
Organism
tps
Thalassiosira pseudonana
Pathway
tps03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
THAPSDRAFT_21860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tps03041
]
THAPSDRAFT_21860
Spliceosome [BR:
tps03041
]
Complex A
U1 snRNP components
U1 related factors
THAPSDRAFT_21860
Complex B
THAPSDRAFT_21860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
DUF7153
WW_2
Motif
Other DBs
NCBI-GeneID:
7449501
NCBI-ProteinID:
XP_002288928
JGI:
21860
UniProt:
B8BYF2
LinkDB
All DBs
Position
3:complement(1490904..1494547)
Genome browser
AA seq
952 aa
AA seq
DB search
MHLYSPADPDRATPTHLQIDTAMQRQPPGRGGRMGGRGGGAGRSPPNMGRGGGMSHYGPA
SMDQRPPQQQHQQRGGPNNINNMMMGRGGPGGGRIQDPGRGMGMVHNGRGFPPQHPLDQQ
QQFQRPQGQGMLRQNNINNVPPMPPHRGHPNNNNQGRVGGGRDGGHHHRLPPPPGRGNMG
GGMNQQPPHPNHPHAGRGGMIQHPGNHPQPPFQRQQQQQGQRQPPPPPPPPPMPHQHHIM
MHGNNPPHMMHQGGGMHGMHPQDQQQRMGPPMQQPNNNMPQQPPYQQQMGQQQQIHQGMM
QPNNNMNMPPQQQQQQQQQRQFQGQQPVQQYPQQNFQQQQPGMGLPQGLPMGYPQHQLQQ
GMNAPPMYQQQQQQHAGMQMQPQPMTAYPQSNAMNAPNNMASRPAPQSVLPTAATPSAAT
ADGWTEHSSPTGIPYYYNTITGVSTYDRPSCLPAVATIDKSKQTTVVATDKAAATRTWTA
YTDASSGKMYYSDGVTTTWTCPPELADSEDGKANGNKRGTSGDNDASQRKPKRKKVSDNE
ETPYASKAEAVAAFKGLLLAKDISPTTKWNDVVRICSDDFRWEACTTVGERKQCLAEYQT
KRANELRDVKRQEKARAKEAYQRLLTDVLPKVVGFAPGASRFMDVRDSLSKDDRFYAVED
ETTREELFYDFVEELRKREERSKRNKKRETKEYFVSFLKTFEEQGKLTFASTWSTFISSL
DESQKKDSKFTVSANMSDSDRQLFFADFITELQIAEDEKQRRIFDAERRAEKAQRDAYRQ
LLRDMAKAGALIPSTRWRGVEHKILSDPIVAPVQAQGREFPREIFEEFIGEWSDVYRDDR
AVLNRVLKTPGKEFRFDDSTTIDSFTSMLMDSASPSPELYGEIRRILNSKHMTTSAQLLF
DELRAEHEARSDGNKRGNLLNGEESSEDEGEIIEDEEGEEPQQSLAEKEPTE
NT seq
2859 nt
NT seq
+upstream
nt +downstream
nt
atgcacctttactccccggccgaccctgaccgcgcgacgcccacacatttgcaaatcgac
accgcgatgcaacgacaacctcccggaagaggaggacgaatggggggccgaggaggtgga
gcagggcgatcaccacctaatatgggacgtggcggcggaatgtctcattatggcccagcg
tcgatggatcagagaccgccacaacaacaacatcagcagcgtggcggtccaaacaacatc
aacaacatgatgatgggcagaggaggtcccggtggaggtagaattcaagaccccggacgt
ggaatgggaatggtgcacaatggcagaggattccctccacagcatcctttggatcagcag
cagcagtttcaacgtccacaagggcaagggatgcttcgtcaaaacaacattaacaatgta
cctccgatgccgcctcaccgtggccatccaaacaataataatcaagggagagtaggagga
ggtagagatggtggtcaccaccatcgtctgccgccccctccgggcagaggcaatatgggt
ggtggaatgaatcaacaacctcctcatccgaatcaccctcacgctggtcgtggaggaatg
attcaacatcccggtaatcacccgcagccaccgtttcaaaggcagcagcagcagcaggga
cagaggcagcccccgccgcctcctcctcctcccccgatgccacatcaacatcatatcatg
atgcatgggaacaatccacctcacatgatgcatcaaggcggcggcatgcacggaatgcat
cctcaagaccaacaacaacgcatgggacctccaatgcagcaaccaaacaacaacatgccc
caacaacctccctatcaacaacaaatgggacaacagcaacaaattcatcaaggaatgatg
caaccgaacaacaacatgaacatgcctccacagcagcagcagcagcagcagcagcaaaga
cagttccaaggacaacaaccagtacaacaatatcctcaacagaacttccaacaacaacag
cctggtatgggactaccgcaaggacttccaatgggttacccacaacatcaacttcaacag
ggcatgaacgcccctccaatgtatcaacagcagcaacaacaacatgctggtatgcaaatg
caacctcaacccatgacagcataccctcaatctaatgccatgaatgcaccaaacaacatg
gcgtctcggcctgctcctcaaagtgtactaccaacagctgcaactccctctgctgctact
gcagatggatggacagagcactcctcacccacgggaataccctattattacaatacaatc
actggcgtatcaacatatgatcgtccttcgtgcttgcctgcagttgcaactatagacaag
tcaaaacaaactacagtggtggctactgacaaagcagcagcgacacgaacttggactgca
tacacagatgcgtcaagcggaaaaatgtattactcagatggtgtaactactacatggacg
tgccccccagaacttgctgattcagaagacggtaaagcgaatggaaacaaacgaggtact
tccggggataatgatgcatcgcaacgaaagccaaagagaaagaaggtgtcggacaatgaa
gaaactccatatgcaagcaaagccgaggcagtcgctgccttcaaaggcttgctattggca
aaagacatctctccgacaactaagtggaatgacgttgttcgcatctgctctgatgatttt
cgatgggaggcatgtacaactgttggggagcgcaagcaatgcttggcagagtatcaaacc
aaacgcgcaaacgagttgagagacgtgaagcggcaagagaaagcgagagcgaaggaagct
tatcaacgattactcactgatgtcttgccgaaggtggttggatttgcccctggagcttcg
aggtttatggatgtgagggattcattatcgaaagatgatcgcttctacgcggttgaggat
gagactacgagggaggagctattttacgactttgtggaagagttgaggaaacgggaggag
cggagcaagaggaacaaaaagcgagagacgaaggagtactttgtttcttttcttaagacg
tttgaagagcaaggcaagctgacgtttgcttctacgtggagcacgttcatctcgtcattg
gacgagtctcaaaagaaagactcaaagttcacagtatctgccaacatgtcggactccgac
cggcaactcttcttcgctgattttataactgaattgcaaatagccgaggatgagaaacaa
aggcgtatatttgatgctgaacgacgtgccgaaaaggctcaacgtgatgcatatcggcaa
ttacttcgggacatggcgaaagctggagcgctcattccatctactcgttggcgtggagtt
gaacacaaaatcctctccgatcctattgttgcacctgtccaggctcaaggaagagagttt
ccgagggagatatttgaagagttcatcggcgaatggagtgacgtatacagagatgatcgt
gcagtattgaaccgtgttctcaaaacgccagggaaggagttccgatttgatgacagtaca
acgattgattcctttactagtatgttgatggattccgcatccccatcgccggagctgtac
ggtgagattagacgaatattgaactcgaaacacatgactacgagtgcacaactgctcttc
gatgaattacgtgccgagcacgaggcaaggtcggacgggaataagagggggaatttgttg
aatggtgaagaatccagtgaggatgagggggaaatcatagaagacgaagaaggcgaggaa
cctcaacaatcattggcagagaaagagcctaccgagtaa
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