KEGG   Thalassiosira pseudonana: THAPSDRAFT_21860
Entry
THAPSDRAFT_21860  CDS       T01078                                 
Name
(RefSeq) predicted protein
  KO
K12821  pre-mRNA-processing factor 40
Organism
tps  Thalassiosira pseudonana
Pathway
tps03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tps00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    THAPSDRAFT_21860
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:tps03041]
    THAPSDRAFT_21860
Spliceosome [BR:tps03041]
 Complex A
  U1 snRNP components
   U1 related factors
    THAPSDRAFT_21860
 Complex B
    THAPSDRAFT_21860
SSDB
Motif
Pfam: FF WW DUF7153 WW_2
Other DBs
NCBI-GeneID: 7449501
NCBI-ProteinID: XP_002288928
JGI: 21860
UniProt: B8BYF2
LinkDB
Position
3:complement(1490904..1494547)
AA seq 952 aa
MHLYSPADPDRATPTHLQIDTAMQRQPPGRGGRMGGRGGGAGRSPPNMGRGGGMSHYGPA
SMDQRPPQQQHQQRGGPNNINNMMMGRGGPGGGRIQDPGRGMGMVHNGRGFPPQHPLDQQ
QQFQRPQGQGMLRQNNINNVPPMPPHRGHPNNNNQGRVGGGRDGGHHHRLPPPPGRGNMG
GGMNQQPPHPNHPHAGRGGMIQHPGNHPQPPFQRQQQQQGQRQPPPPPPPPPMPHQHHIM
MHGNNPPHMMHQGGGMHGMHPQDQQQRMGPPMQQPNNNMPQQPPYQQQMGQQQQIHQGMM
QPNNNMNMPPQQQQQQQQQRQFQGQQPVQQYPQQNFQQQQPGMGLPQGLPMGYPQHQLQQ
GMNAPPMYQQQQQQHAGMQMQPQPMTAYPQSNAMNAPNNMASRPAPQSVLPTAATPSAAT
ADGWTEHSSPTGIPYYYNTITGVSTYDRPSCLPAVATIDKSKQTTVVATDKAAATRTWTA
YTDASSGKMYYSDGVTTTWTCPPELADSEDGKANGNKRGTSGDNDASQRKPKRKKVSDNE
ETPYASKAEAVAAFKGLLLAKDISPTTKWNDVVRICSDDFRWEACTTVGERKQCLAEYQT
KRANELRDVKRQEKARAKEAYQRLLTDVLPKVVGFAPGASRFMDVRDSLSKDDRFYAVED
ETTREELFYDFVEELRKREERSKRNKKRETKEYFVSFLKTFEEQGKLTFASTWSTFISSL
DESQKKDSKFTVSANMSDSDRQLFFADFITELQIAEDEKQRRIFDAERRAEKAQRDAYRQ
LLRDMAKAGALIPSTRWRGVEHKILSDPIVAPVQAQGREFPREIFEEFIGEWSDVYRDDR
AVLNRVLKTPGKEFRFDDSTTIDSFTSMLMDSASPSPELYGEIRRILNSKHMTTSAQLLF
DELRAEHEARSDGNKRGNLLNGEESSEDEGEIIEDEEGEEPQQSLAEKEPTE
NT seq 2859 nt   +upstreamnt  +downstreamnt
atgcacctttactccccggccgaccctgaccgcgcgacgcccacacatttgcaaatcgac
accgcgatgcaacgacaacctcccggaagaggaggacgaatggggggccgaggaggtgga
gcagggcgatcaccacctaatatgggacgtggcggcggaatgtctcattatggcccagcg
tcgatggatcagagaccgccacaacaacaacatcagcagcgtggcggtccaaacaacatc
aacaacatgatgatgggcagaggaggtcccggtggaggtagaattcaagaccccggacgt
ggaatgggaatggtgcacaatggcagaggattccctccacagcatcctttggatcagcag
cagcagtttcaacgtccacaagggcaagggatgcttcgtcaaaacaacattaacaatgta
cctccgatgccgcctcaccgtggccatccaaacaataataatcaagggagagtaggagga
ggtagagatggtggtcaccaccatcgtctgccgccccctccgggcagaggcaatatgggt
ggtggaatgaatcaacaacctcctcatccgaatcaccctcacgctggtcgtggaggaatg
attcaacatcccggtaatcacccgcagccaccgtttcaaaggcagcagcagcagcaggga
cagaggcagcccccgccgcctcctcctcctcccccgatgccacatcaacatcatatcatg
atgcatgggaacaatccacctcacatgatgcatcaaggcggcggcatgcacggaatgcat
cctcaagaccaacaacaacgcatgggacctccaatgcagcaaccaaacaacaacatgccc
caacaacctccctatcaacaacaaatgggacaacagcaacaaattcatcaaggaatgatg
caaccgaacaacaacatgaacatgcctccacagcagcagcagcagcagcagcagcaaaga
cagttccaaggacaacaaccagtacaacaatatcctcaacagaacttccaacaacaacag
cctggtatgggactaccgcaaggacttccaatgggttacccacaacatcaacttcaacag
ggcatgaacgcccctccaatgtatcaacagcagcaacaacaacatgctggtatgcaaatg
caacctcaacccatgacagcataccctcaatctaatgccatgaatgcaccaaacaacatg
gcgtctcggcctgctcctcaaagtgtactaccaacagctgcaactccctctgctgctact
gcagatggatggacagagcactcctcacccacgggaataccctattattacaatacaatc
actggcgtatcaacatatgatcgtccttcgtgcttgcctgcagttgcaactatagacaag
tcaaaacaaactacagtggtggctactgacaaagcagcagcgacacgaacttggactgca
tacacagatgcgtcaagcggaaaaatgtattactcagatggtgtaactactacatggacg
tgccccccagaacttgctgattcagaagacggtaaagcgaatggaaacaaacgaggtact
tccggggataatgatgcatcgcaacgaaagccaaagagaaagaaggtgtcggacaatgaa
gaaactccatatgcaagcaaagccgaggcagtcgctgccttcaaaggcttgctattggca
aaagacatctctccgacaactaagtggaatgacgttgttcgcatctgctctgatgatttt
cgatgggaggcatgtacaactgttggggagcgcaagcaatgcttggcagagtatcaaacc
aaacgcgcaaacgagttgagagacgtgaagcggcaagagaaagcgagagcgaaggaagct
tatcaacgattactcactgatgtcttgccgaaggtggttggatttgcccctggagcttcg
aggtttatggatgtgagggattcattatcgaaagatgatcgcttctacgcggttgaggat
gagactacgagggaggagctattttacgactttgtggaagagttgaggaaacgggaggag
cggagcaagaggaacaaaaagcgagagacgaaggagtactttgtttcttttcttaagacg
tttgaagagcaaggcaagctgacgtttgcttctacgtggagcacgttcatctcgtcattg
gacgagtctcaaaagaaagactcaaagttcacagtatctgccaacatgtcggactccgac
cggcaactcttcttcgctgattttataactgaattgcaaatagccgaggatgagaaacaa
aggcgtatatttgatgctgaacgacgtgccgaaaaggctcaacgtgatgcatatcggcaa
ttacttcgggacatggcgaaagctggagcgctcattccatctactcgttggcgtggagtt
gaacacaaaatcctctccgatcctattgttgcacctgtccaggctcaaggaagagagttt
ccgagggagatatttgaagagttcatcggcgaatggagtgacgtatacagagatgatcgt
gcagtattgaaccgtgttctcaaaacgccagggaaggagttccgatttgatgacagtaca
acgattgattcctttactagtatgttgatggattccgcatccccatcgccggagctgtac
ggtgagattagacgaatattgaactcgaaacacatgactacgagtgcacaactgctcttc
gatgaattacgtgccgagcacgaggcaaggtcggacgggaataagagggggaatttgttg
aatggtgaagaatccagtgaggatgagggggaaatcatagaagacgaagaaggcgaggaa
cctcaacaatcattggcagagaaagagcctaccgagtaa

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