Thalassiosira pseudonana: THAPSDRAFT_22016
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Entry
THAPSDRAFT_22016 CDS
T01078
Name
(RefSeq) ABC transporter
KO
K05658
ATP-binding cassette, subfamily B (MDR/TAP), member 1 [EC:
7.6.2.2
]
Organism
tps
Thalassiosira pseudonana
Pathway
tps02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
THAPSDRAFT_22016
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
tps02000
]
THAPSDRAFT_22016
04147 Exosome [BR:
tps04147
]
THAPSDRAFT_22016
04090 CD molecules [BR:
tps04090
]
THAPSDRAFT_22016
Enzymes [BR:
tps01000
]
7. Translocases
7.6 Catalysing the translocation of other compounds
7.6.2 Linked to the hydrolysis of a nucleoside triphosphate
7.6.2.2 ABC-type xenobiotic transporter
THAPSDRAFT_22016
Transporters [BR:
tps02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB1, 4, 5 subgroups
THAPSDRAFT_22016
Exosome [BR:
tps04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
THAPSDRAFT_22016
CD molecules [BR:
tps04090
]
Proteins
THAPSDRAFT_22016
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
SMC_N
ABC_ATPase
AAA_22
AAA_29
AAA
Motif
Other DBs
NCBI-GeneID:
7443811
NCBI-ProteinID:
XP_002288593
JGI:
22016
UniProt:
B8BWG8
LinkDB
All DBs
Position
3:2241020..2246533
Genome browser
AA seq
1460 aa
AA seq
DB search
MTAVIDEEAPEINADEKKDDASDDGFNNFLKFVQPNNKDVNDDGDDRSEASEGYKNFLQF
LQTVPSPAAVAPPSSKAGKTMQELEKASEDVALLNGSADKPPKDGATTTALATKKSKKKK
KKDPETAPATLSQVLSFLPTTQDHALLVAGIFFGVLNGLVFPALAYIFSNSFSNLGSTTE
GLGPIREIAFTFLGVGAYAFVVAALQNMAFEILSVRAADNFKKMWFASLLRQDAAFHDIH
SVSGMATALSSASSKMKRGLGRKLGEGIQFGTTFVGGIIYAFYSSWRVALVVLALLPVVS
FAAYFLMQLNQNQTSNAQKAYTAAGSTAYGAVSSIRTVLSLNAVPEMIRQYCVATKEAYN
NGVRPLFKLGMVNGSMLGSFILLYAVLTLYGGYLLYSEVEDTGCDASGAVPGVETCTSSG
PAVFGSMLGVAFAAQGMSQLANSMEALSSARSACAQAMVAIDRKLGSEATVVTKKVSSKK
DGGGEDGDEDELEETYTLPKYEIDSSSHHGLRPHVTEGEVIFKDVDFAYPTRPDNLIFNK
FNLKIPSGKTVALVGPSGGGKSTTIGLIERFYDPLSGSVSLDGTDMKDLNVNHLLSDDVF
CAIVALLSATDVSDLVSYVPHRTVEQNIRYGKPDATRAEIEEAAKRANAFDFIMSFNDGF
ETQVGDKGSQLSGGQKQRIAIARVLIGNPKLLLLDEATSALDSESELVVQEAIEKLLALE
KRTTIIIAHRLTTIRNADVIVVISGGQVVEMGTHDELMNADTGHYRALVHKQEHSLAGAD
ENISRNSSEGNLAGSNSAKDLVRLESSAVMGKSFANVTQLKFREVKFAYPTRPKKPILDK
FMLSVKKGETLALVGPSGGGKSTVMGLIERYYDPDSGSIEFEGVDLKELNIGWYRDQISI
VSQEPCLFAGTIGRNIAYGYPEATEKDIIKAAMDANAHDFISSFPKGYDTDVGESGGQLS
GGQKQRIAIARALVKDPKILLLDEATSALDSESERVVQMALDKLMEDHSRTTIVIAHRLS
TIRRADRIAFIAGGKLREIGSHDELMDKPNGRYRRLVESQKRSNTVDIEAIKKDNVHAID
EDEEDIDFEKEAEELASNAFDKAAARAMAAPEVKFYILGSIGAIFAGGVFPAWGIVFAKM
IGLLFYPTMPCTSDVEASYYGFTTCSEYLSFIADDMQQLSFTIAWYWVGIIAACFVGNVL
IFQGFGYATERINKRIRDTTFSSLMRQEVAFFDKRSVGSITSQLQDDAAFVFAFSGEPVR
TLVMNLSSVMTGITISLIYMWPFALLSLGIIPFMGFATALEMKRFLGEDEGGENTEDGRD
SPSGIIVETLLNIRTVSALTLEEQRYEDYKQALTKAEGDLVKESAISGILAGLAVGIQQW
VNALQFWWGGWLLFNYPTVFGFEDFLIAMFALLFSLFALGAAAQGATDKPKAEAAMGRLQ
FLMNRKSEIDPLSTEGKKLS
NT seq
4383 nt
NT seq
+upstream
nt +downstream
nt
atgaccgccgtcattgacgaagaagcccccgaaatcaacgccgacgaaaagaaggatgac
gcctcggacgatggtttcaataactttctcaagttcgtccaaccaaacaacaaggatgtc
aacgatgacggtgatgaccgcagtgaagcctccgagggatacaagaacttccttcagttt
cttcagaccgtcccctctcctgcagcggtggctcctccgtcgtccaaggctggcaagacg
atgcaagagttggaaaaggcctcagaggatgttgcccttctcaatggctctgccgacaag
ccacccaaagatggggcaacaaccactgcattagcaaccaagaaatcaaagaagaaaaag
aagaaggaccccgaaacagcacccgccacactctcccaagtcctctccttcctccccaca
actcaagatcatgccctcctcgttgcaggaatcttcttcggtgtgctcaacggccttgtc
tttcccgcattggcgtacatcttctccaactccttctccaacttgggaagcaccaccgag
ggacttggccccatccgtgagattgcctttacgttcttaggcgtgggagcgtatgccttt
gtggtagcggcgttgcagaacatggcgtttgagatattgagtgttcgcgccgcggataac
tttaagaagatgtggttcgcgtcgttgctaaggcaggatgctgcctttcatgatattcat
tccgtgtctggaatggccaccgcgttgagttcggcgagtagcaagatgaagagaggattg
ggtaggaagttgggagaggggattcagtttggaaccacgtttgttggggggatcatctac
gctttttacagcagttggagagtggctttggtggtattggctttgttgcctgtggttagt
tttgctgcgtatttcttgatgcagttgaatcaaaatcagactagcaatgctcaaaaggcc
tacactgctgctggatccactgcctacggtgcagtctcgtccatccgaactgttctctcc
ctcaacgcagtccccgaaatgattcgtcagtactgtgtcgcgacaaaagaagcatacaac
aatggagttaggccgctcttcaaacttggaatggttaacggatctatgcttggttctttt
attcttctgtatgctgtattaactttgtacggtggctacttactttacagcgaagtggag
gataccggttgtgatgcatcaggagctgtccccggagttgagacgtgcacaagttcggga
cctgcagttttcggatcaatgcttggagttgcatttgctgcccagggaatgagtcaactc
gccaacagtatggaagcattgagcagtgcacgatcggcctgtgctcaggccatggttgcg
attgatcgtaagttgggatcagaggcaaccgttgttacgaagaaggtgtcgtcaaagaag
gatggtggtggagaggatggcgatgaagatgagttggaagaaacgtatacactaccgaag
tatgagatcgactcatcttctcatcatggattaaggccacatgttactgagggagaagta
atcttcaaggacgtagattttgcttatcctacccgacccgacaacctaatcttcaacaag
ttcaatttgaagattccttctggaaagactgtcgccctcgttggaccatctggaggagga
aagtcgacaactattggtttgattgaacgattctacgatccactctcaggatcagtttca
cttgatggaactgatatgaaagacctaaatgtgaatcacctactaagtgatgacgtcttc
tgtgctatcgttgctttgctatcagcgaccgatgtctctgacctcgtttcttacgttcca
caccgaacagttgaacaaaacattaggtatggcaagccagacgcgacacgtgcagagatc
gaggaagcggcgaaacgagccaatgcttttgatttcatcatgagcttcaacgatggcttt
gagactcaggttggtgacaagggatcgcaactctcgggaggacagaaacaaagaatcgcc
attgctcgtgtgttgattggaaatcccaagctgttgctgttggacgaagcgacttcagct
ctagattctgagtcagaactcgttgtgcaagaggctattgagaagctattggccttggag
aagcgtactactatcatcatcgcacaccgtctcaccacgattcgtaatgcagatgttatt
gttgtcatatcgggtgggcaagttgttgaaatgggtacacacgatgagttgatgaatgct
gacactggtcactatcgtgcacttgttcacaaacaggagcactccttggcgggagctgac
gaaaatatctctcgcaattccagtgagggcaatttggcaggttcgaacagtgcaaaggat
ttggtaaggcttgaaagctctgccgtcatgggaaagtcctttgccaacgtgacgcagttg
aagttccgagaagttaagtttgcttatccgactcggccaaagaagccaattctcgacaag
ttcatgctatcggtaaagaaaggtgaaactttggctctcgttggccctagtggtggaggg
aaaagcaccgtgatgggtctcattgaacgttattacgacccagactcgggatcaattgag
ttcgaaggtgttgatttgaaagagttgaacatcggatggtatcgtgatcaaatcagtatt
gtgtctcaggaaccatgtctgttcgccggaaccattggaaggaacattgcttatgggtat
cctgaagctactgaaaaagatataatcaaagcagcaatggatgctaatgcacatgacttt
atctccagcttccccaaaggatatgatactgacgttggtgagagtggaggtcagctttca
ggcggacagaaacagagaatcgccattgcacgtgccctcgtcaaggatccaaaaatcctt
ctcctcgatgaggccacgtcagctcttgactctgaatctgaacgtgttgtgcaaatggca
ttggacaagttaatggaagatcacagccgtacgactatcgtcattgcccatcgcctttcc
acaattcgaagagctgatcgcattgcgttcattgccggtggaaagctccgcgagatcggc
agtcacgatgagttgatggacaagccaaatggtcgttatcgtcgtcttgtggaaagtcaa
aagcgttctaatactgttgacattgaagctattaagaaagataatgtgcatgcaatcgat
gaggacgaagaggatatcgactttgagaaagaggccgaagagttggcgtcaaacgctttc
gacaaagctgcggctcgagcgatggctgctcctgaagtcaaattctacattttgggaagt
atcggtgcaatctttgcgggaggcgtctttccagcatggggtatcgtctttgccaagatg
attgggcttttgttttacccaacaatgccttgtaccagtgatgttgaagcgagctactac
ggctttactacttgcagcgaatacctcagcttcattgccgatgatatgcagcagctgtca
tttacaattgcatggtactgggtgggtatcatcgcagcctgttttgtcggtaatgtgttg
atcttccaaggatttggttacgcaactgaacgcatcaacaagcgcatcagagacacgaca
ttttcttctctcatgaggcaggaggtcgctttcttcgacaaacgtagtgttggatctatt
acgagccagctccaagatgatgctgcatttgtgtttgccttcagtggagagccagtcagg
acattggtgatgaatttgtcttccgtcatgacgggtattacaatcagtttgatctacatg
tggccgtttgcacttctatctctcggcatcattccgttcatgggattcgccactgcacta
gagatgaagcgcttcctcggcgaagacgaaggtggagagaataccgaggacggccgtgat
agcccaagtggaatcatcgtcgagactctgctcaatatccgtactgtctctgcgttgaca
ttggaagaacaacgttatgaagactacaagcaagccttgaccaaagctgaaggagatctg
gtcaaagaaagtgccatatcgggtatccttgccgggcttgctgtcggtattcaacagtgg
gtgaatgctttgcagttctggtggggtggatggctcctattcaactacccaaccgttttt
ggctttgaggacttcttgattgcaatgttcgcgctcctcttttctcttttcgctctcggt
gctgctgcgcaaggagcgacagataagccaaaagctgaggccgcaatgggacgtcttcag
ttcctaatgaacagaaagagcgagatcgacccgctcagtacagagggaaagaagctgtcc
taa
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