Thalassiosira pseudonana: THAPSDRAFT_22036
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Entry
THAPSDRAFT_22036 CDS
T01078
Name
(RefSeq) predicted protein
KO
K00784
ribonuclease Z [EC:
3.1.26.11
]
Organism
tps
Thalassiosira pseudonana
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tps03016
]
THAPSDRAFT_22036
Enzymes [BR:
tps01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.11 tRNase Z
THAPSDRAFT_22036
Transfer RNA biogenesis [BR:
tps03016
]
Eukaryotic type
3'processing and CCA adding factors
3'processing factors
THAPSDRAFT_22036
Prokaryotic type
THAPSDRAFT_22036
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_2
Lactamase_B
Lactamase_B_4
Motif
Other DBs
NCBI-GeneID:
7443830
NCBI-ProteinID:
XP_002288614
JGI:
22036
UniProt:
B8BWK7
LinkDB
All DBs
Position
3:2330287..2332849
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AA seq
841 aa
AA seq
DB search
MTASIRILTTSTLDSSPSLLIISPDGSKTLINCAEGCQRSFLEASSSLRVRTVNRICLTH
LGHDAFGGLPGMILTTADVAENAAKDYKQKMDRAVQNTGALKQGSGGEDVPKTSKKRNHK
RSASASLVFNNDGSDKERDMADLEIVGPDGIKDFLHSLRHFMRRDRFHVHVHEGEFISSS
CSKTITGNTKAKKKAKLNKTKSGTNEEVNFNVESIPISYEVNPSSGDESNNADLSDQPPV
ITKQAASYLFTTPPLPGKFLIEKAIELNIPRGPLYAQLKGGKSVKFPDPTTNEERTVLPE
EVLEKGSAGVGAAVIYCPNLEVLRKLRESSLLQKFTAKKQRTGTAGACIELDAIVHLTPK
SVFDCDEYQSWCREFGEKVDHITLHAAHTLEDRIACGGNSPFISAVRGGIQRSHVNSELY
PMLIPEDSNGDTANETVREDGFKPIKGYPMMEYVLMPRHKRGLDESVELSSYSQNDIDSL
KKEVLDSGAVELGSKILSALAETETNTESGNNGELLFTGTGSAVPCKHRNVTGMYLRMNN
GNSLLLDVGEGTVGQLLHLWKCYFTGDNVVDEYNSRVKGIKAVWISHPHADHHLGILRLL
SERNVVCGSDDPIVLMAPPNMFAFLSEYQSVVPDIGRSYIAVDCRDMIYGKEHPMGKKLF
SDLGITNCMSVPVAHCPHSFAVVIDGTSFGRVSYSGDCRPSSRFAQVGYGSDLLIHEATF
EDGMEEEAFLKRHSTVGEAIDIGQQMKASTICLTHFSQRYPRIPPLKTTPTDDLPIAFAF
DYMRLKPSLILLASKMTPALRLLYPEENGEEDEKMTTETSGDSIAKDLMAVPGVFAAKGV
L
NT seq
2526 nt
NT seq
+upstream
nt +downstream
nt
atgacggcctctatccgtatactcacaacctctaccctagattccagcccttccctcctc
attatatcgcccgacggatccaaaacactcatcaattgtgcagaaggctgccagcgatcc
tttctcgaagcctcctcctccctgcgtgtccgtaccgtcaacaggatatgcctcacacac
ctaggacacgatgcctttggtgggctgcccggtatgattctgactacggcagatgtggcg
gagaatgcagcgaaggattacaaacaaaagatggacagagctgtacagaacactggagca
ttgaaacaagggagtggtggagaggatgtaccaaaaacgtcaaaaaaacgtaatcacaaa
cgaagtgcaagtgcaagtttggtattcaacaatgatggatcagacaaggaacgagacatg
gctgatttagaaattgtcggtcctgatggaattaaagactttctacactctctacgacat
ttcatgcgacgtgacaggttccatgttcacgttcacgaaggcgagttcataagttcatcg
tgcagcaagactattactggcaatacgaaagcgaaaaagaaggcgaaactgaacaagact
aagtcagggacaaacgaggaggtaaacttcaatgtggagtctatcccgatatcgtatgag
gtgaatccttcatcgggcgacgaaagcaacaatgcggatctatctgaccaacctcccgtg
ataacaaagcaagcagcatcgtatctcttcacaacccctccactcccgggaaagtttctc
atcgagaaagcaatagaactcaacattccacgggggccactgtacgcacaattaaaagga
ggaaagagtgtcaagttccctgatcccacaaccaacgaggaacgaaccgttctacccgaa
gaagtgctggagaaaggaagtgcgggtgttggtgctgcagttatctattgtccgaatttg
gaggtattgaggaaactaagagagtcgtccttgttgcaaaagttcacagcaaagaaacaa
cgaactggaacagctggtgcttgcatagagttggatgcaatcgtgcacttgacgcccaaa
tcagtctttgattgtgacgagtaccaatcatggtgcagagagtttggagaaaaagttgat
catatcaccttgcatgcagcacacacgttggaagaccgcattgcgtgtggaggcaacagt
ccattcatctcagctgtacgcggaggtattcagcgatctcacgtaaacagcgagctctat
ccaatgctcattccggaagacagcaacggagatacagcaaatgaaactgttcgcgaagat
ggttttaaaccgattaagggctatccaatgatggaatatgtgttgatgccacgccacaaa
cgaggactagatgagtcagttgaactgtcttcttactctcagaatgatatcgattcgctg
aagaaggaggtgttagactctggtgcagttgaactcggttcaaagattttatcagctctc
gcggaaacagaaacaaatacagagtctgggaacaatggtgaattgctgttcactggcaca
ggttccgcagttccgtgcaaacatcgtaatgtcactggaatgtatctaagaatgaacaat
ggcaacagcttgcttctagacgtaggagaggggacggttggacagctgcttcatttgtgg
aaatgttattttacaggagacaacgtggttgacgaatacaactcacgtgtgaagggaatc
aaagccgtgtggatatcgcatcctcacgcggatcatcatttaggcatcttgcgtttgcta
tcagaacgaaatgtagtttgtggctccgatgatccaatcgttctcatggcgccgccgaac
atgtttgctttcttatcggaatatcaatctgttgttccagatattggtcgtagctatatc
gcagtagactgccgagatatgatctacggaaaggagcatccaatggggaagaagttgttt
agtgatcttggcatcaccaactgcatgtctgttcctgtcgcacactgccctcattccttt
gcagtggtgattgacggaacatcgtttggacgagtatcttacagtggcgattgtcgtccg
tcatcgagatttgcacaagttggatatggctcagatctattgattcacgaagcaacgttc
gaagacggtatggaagaagaggcgtttcttaagcggcattctactgttggcgaggctatt
gatattggtcagcagatgaaagcctcaactatttgcttgacacacttctcacaacgatac
ccacggattccaccactgaaaacaacaccaacggacgatttgccgattgcttttgcgttt
gattacatgagattgaagccgagtctgatattattggcttctaaaatgactcctgctttg
cgattgctttatccggaagagaatggtgaagaagatgagaaaatgacgactgaaacgagt
ggcgatagtattgcaaaggacctcatggctgtgcccggtgtatttgctgcaaagggtgtt
ctgtag
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