Thalassiosira pseudonana: THAPSDRAFT_22240
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Entry
THAPSDRAFT_22240 CDS
T01078
Name
(RefSeq) eukaryotic peptide chain release factor subunit 1
KO
K03265
peptide chain release factor subunit 1
Organism
tps
Thalassiosira pseudonana
Pathway
tps03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
THAPSDRAFT_22240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tps03019
]
THAPSDRAFT_22240
03012 Translation factors [BR:
tps03012
]
THAPSDRAFT_22240
Messenger RNA biogenesis [BR:
tps03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
THAPSDRAFT_22240
Translation factors [BR:
tps03012
]
Eukaryotic type
Release factors
THAPSDRAFT_22240
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
eRF1_2
eRF1_3
eRF1_1
acVLRF1
baeRF_family10
Motif
Other DBs
NCBI-GeneID:
7453361
NCBI-ProteinID:
XP_002289302
JGI:
22240
UniProt:
B8BZ85
LinkDB
All DBs
Position
4:974987..976608
Genome browser
AA seq
460 aa
AA seq
DB search
MGGNTETQDELDQQIEIFKVKKLIKNLEAAKGNGTSMISLILPPGSQISQANKMLSDEYG
TASNIKSRVNRLSVLGAITSAQQRLKLYNKCPKNGLVLYCGTVVTDEGKERKVNIDFEPF
KPINTSLYLCDNKFHTEDLNELLMDDEAFGFIVMDGNGSLYGTVQGSAREVLHKFSVDLP
KKHGRGGQSALRFARLRLEKRHNYVRKVAEMATQLFVPNGQTPNVQGLILAGSADFKSEL
MRSDLFDPRLAKIVLKMVDVSYGGENGFNQAIEFSADTLGSVKLMKEKKLLQKYMDEISL
DTGKYCFMVEDTLKALDLGAVEDLIVWENLDVNRYVLRNSSTGDETIVHLSPEQEKNESF
FHDPESGVELEVVEKEPMVEWFANNYKNFGCNLEYVTDKSGEGTQFVKGFGGIGGILRWK
VDFVELGEFDEAHVHKEDDSDSEGGDDGDDYGFDDGDFGF
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
atgggaggaaacaccgaaacacaagatgaactcgaccaacaaatcgaaatcttcaaagta
aagaagctaatcaagaacctcgaagccgccaaaggaaatggtacctccatgatctccctc
atcttaccccctgggtcgcaaattagtcaggccaataagatgttgtcggatgagtatggt
acggcgagtaatattaagagtagggtgaataggttaagtgttttgggggctattactagt
gcgcagcagaggttgaagttgtataataagtgtcccaagaacgggctcgtcctttactgc
ggtaccgtcgtcacagacgaaggcaaagaacgtaaagtcaacatcgactttgaacccttc
aaacccatcaacacctccctctacctctgtgacaacaagttccacaccgaagacctcaac
gaactcctcatggacgacgaagcctttggcttcatcgtaatggacggtaacggctccctc
tacggaacagtgcagggatcggctcgagaggtcctacacaagttctcggtcgatctgccc
aagaagcatggaaggggaggtcagtccgccttgcgttttgctcgtttgcgtttggagaag
aggcataactatgtgaggaaggtggcggagatggcgacacagttgtttgtgcctaatggg
cagactcccaatgtacaggggttgattttggctggttcggccgactttaagtctgagttg
atgaggagtgatttgtttgatccacgtttggcaaagattgtgctaaagatggtggatgtt
tcgtatggaggggagaatgggtttaaccaggctattgagtttagtgccgatacgttgggg
tctgtcaagttgatgaaagagaaaaagttgttgcaaaagtacatggacgagattagtctg
gacactggaaagtattgcttcatggttgaggacactctcaaagcattagacttgggtgct
gtagaagatctcattgtatgggagaacttggatgtcaatcgttacgtcttgagaaattcg
tccacgggagacgagaccattgtccatctaagccctgagcaggagaagaacgagagtttc
ttccacgatcctgaatctggcgtcgaacttgaagttgtcgaaaaggaaccaatggtggag
tggtttgccaacaactacaagaactttggttgcaacttggagtatgtcactgataagagt
ggagagggaacacaattcgtcaagggttttgggggcattgggggcattcttaggtggaag
gttgactttgttgagttgggtgagtttgatgaagcacacgttcacaaagaggatgatagt
gatagtgagggtggggatgatggagatgattatggatttgacgatggtgactttggcttt
taa
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