Thalassiosira pseudonana: THAPSDRAFT_22308
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Entry
THAPSDRAFT_22308 CDS
T01078
Name
(RefSeq) predicted protein
KO
K23288
syndetin
Organism
tps
Thalassiosira pseudonana
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tps04131
]
THAPSDRAFT_22308
Membrane trafficking [BR:
tps04131
]
Protein recycling
Others
EARP complex
THAPSDRAFT_22308
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Syndetin_C
QIL1
Motif
Other DBs
NCBI-GeneID:
7446117
NCBI-ProteinID:
XP_002289837
JGI:
22308
UniProt:
B8BZL7
LinkDB
All DBs
Position
4:complement(1330610..1335530)
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AA seq
1551 aa
AA seq
DB search
MSTRTPQDKRTPLRGATPRALLSRLCNASFGAGAEKTNDDTNVASVRQDAVDDEWSTNID
DVEAAFGNNLDRILENQDFTSRMSEGDDTSDYDGEGIYDICTTIDESMQGLHTCLQTNER
VKIRQSTTIMPYEYDWMLDGYECQSDDGLSPASKSRRRQFGDAALDQPLGMMELEDPSFA
TTPGSSKDSILDENEGVVTFADFSQLELDDHPGAAVASANNGEGDNDWSGFVSAEILVPK
HSKQATDGIPQYSTGEDNSESAGFRPPSSIEQLTNHLDTELSMTIEQCLAQSPSLSTSTS
GEDNDSDDMQSPSRSCTNMTSKLAVELSQVVGDSDLELETQQTDTHHQQSLLMSSTLLES
LPMPLPDTSTDNVASFTFRIQQAHLSAKARGKSERHINTQQEDEQLEEKLIDTIHSSYYH
SDGYDIVLDEMLNVPWPFHVAHLDEPWLETDVDTDDSDNFNDLNFDSYISNRLSQLDYAH
GEVMNLLLSRVSQKEEAIDAGTEQILAAELDVATAVMYANASRECLHRAMEGYPVMDEYS
LQTINYDAVSGGFAVVQYSDSRDKLRYLLETIDRISGIRNQELQFWNKIQNLIPPTHYET
LINDARRLKELNCGEEVLLMPCLESMRVRIDSLPDVLRGSVEESLAELFRCILKADANLQ
VDFEQYASLYETLIGAWVACFQLRENDAVNIARLSNSIAAEWSGCVLKVLCFEIAKAYAC
SFIDSSDGDGEAGGIDKAKNEVENVKFNSKDESEMEALSQKLQAIQLGVDPNRSILSSSF
FHLASRLVEAMSLYSLLLQWHESLLTKATELASAQGITDISYGNLQDEVGDTSSQNATMS
TISSDQQSSSECDGDSSDEPSVGCVPESLEFKKSPSSSLQLFNKIMQKNMQSNVGSIRHL
LYTYCESTLVKLFEAYSSGPSSSLRSGESSMDLALRNLSAIDTVKNQFISFAKYFLGSVE
DDDAGICIPLDNELSKLYRGHLRTVHIEAMKTTGTLLRHETWQLTSVDLPQRTINLDNDE
KKCMCSHTDQGCGDCSGQNTTMTAIYEAVCNHLSEFIQNNSASSDKLLITTRAVRNGYKL
CDWFKEYLDTTTASDHATTPYIFPQQLRECVGLASKEFAACVLEFAERKSCGELCLSLLT
QSCMNGLVKWTGRLIAVGNALPSVANDVSYAITTLFDLYILTVFRMCARNSRNEDVLVGL
RRGSSSFDGSNGVKSNSVSLTIEADICAPLPREVRVFEPVQHFVTTGRSRLENIVNLDRF
ESANDMGVLSPRSLNELKNASRRLEKDTGAAASCLFAAILIDVASKAFQKSIGSANEESF
DSEEESCRIDSLETYALDAISMAPLLTQQSCRLACVHSISGKELIFQIICVGKAWEDRDI
MEHSNAYVDDLLERCGEIWGHLSSSSLPQSVLKYVWNQLVRSAFLTLQEGFSKISNCSTE
GRSLMSMDLATLSHGLISDTIKANLEEAYPTISPPPDSCREEVMRYVDAFIKVFYYPDED
TLDWIRENAGNYHFEHSLSLVTVKCASGCEGSSFWAARKDVVREIYRELKL
NT seq
4656 nt
NT seq
+upstream
nt +downstream
nt
atgtccacacgaacgccgcaagataaacgaactccattacgaggtgccactccacgagcg
ctgctatcccgtctatgcaacgcttcattcggtgcgggcgcagagaagaccaatgatgat
accaacgtggcgtctgtgagacaagatgctgttgacgacgaatggtccaccaacattgac
gatgtagaggcagcctttggcaataatttggatagaatattggagaatcaagattttaca
tctagaatgtcagagggagatgatacaagtgactacgatggggagggtatctacgatata
tgtactacaattgatgaatccatgcaaggcctacacacgtgtctgcagaccaatgaacgt
gtaaagataagacaatctacgacaatcatgccatatgaatacgattggatgcttgacgga
tatgaatgccaatcagacgatggactttcacccgccagtaaaagccggcggagacaattt
ggtgatgcagctctcgatcaaccgttaggaatgatggagttggaggatccaagctttgca
actactccggggagcagtaaggacagtatactagatgaaaatgagggtgtggttacattt
gcagacttttctcagttggagcttgatgatcatccgggtgctgctgtagcgagcgcaaac
aatggagagggtgacaacgattggagtggatttgtctctgctgagattttggttccgaaa
catagcaagcaagctactgatggcataccgcaatattcgactggagaagacaacagcgaa
tctgcgggctttcggccaccgagctcaattgaacaacttaccaaccatcttgatacggag
ctcagtatgacgattgagcaatgcctcgcacaatcgccttcattatcaacctctacttcg
ggcgaggacaatgattcagacgatatgcaatccccatcgaggagctgtaccaacatgaca
tcgaagctagcagtagaactatcacaagtagtcggggactctgatttagaactggaaaca
caacagaccgacacccaccaccagcaatcactcctcatgtcgtccacgttactggagtcg
cttccgatgccacttcctgatacatccacagacaacgtggcatcgttcacgtttcgtatt
cagcaagctcatttgagtgcaaaggctcgcgggaagagcgaaagacatatcaatacacaa
caggaggatgagcagcttgaagagaagttgatagacactatacactcgagttactatcac
agcgatggatacgacattgttcttgacgaaatgttgaatgtaccatggccatttcacgta
gctcatcttgacgagccgtggttagaaactgacgtagacacagacgacagtgacaacttc
aacgacctcaactttgattcctacatatccaatcggctctcgcagttagactatgcccat
ggtgaggtaatgaacctcctcttgtcacgagtcagtcaaaaagaagaggcaattgatgct
ggtaccgaacagattctcgctgccgagttggatgtcgctaccgctgtgatgtatgccaat
gcaagccgtgaatgcctgcatcgggcaatggagggatatccagtgatggacgagtattct
ctacaaacaatcaactatgatgcagtgtctggaggtttcgccgttgttcagtactctgac
agcagagataaacttcgatatttgcttgaaacaatcgataggatatcgggtatccgcaat
caggagttacagttttggaacaagattcagaatctcattcctccaacacattatgagaca
ctgatcaatgatgcaagacgactgaaggagctgaattgtggagaggaagtacttctcatg
ccttgccttgaatcgatgcgcgttagaattgacagtcttcctgacgtcttgcgtggctct
gtagaggaatcacttgcagagttgtttcggtgcatccttaaagccgacgcaaacttgcaa
gttgattttgaacagtacgcctcactctacgagactctcattggtgcgtgggtggcttgc
tttcaattgagggagaacgacgcagttaatatagcgcgactatccaattcaattgcggca
gaatggtctgggtgtgtgctgaaagtgctttgctttgagattgccaaagcctacgcgtgt
tcttttatagactcctctgatggcgatggagaggccggtggcattgacaaggccaaaaat
gaagtggagaacgtcaaattcaactcaaaagacgagtcggagatggaggcattgtcgcag
aaactgcaagcaatacaacttggtgttgatccaaatagaagcatcctgtcttcttcgttc
ttccatttggcgtcgcgattggtggaagcaatgagtctttacagtctactacttcagtgg
catgaatcattgctgacaaaagcaaccgaactagcgtctgctcaaggtattacggatata
tcatatggcaatttgcaggacgaagtaggagatacatcgtctcaaaatgcaaccatgtca
acaatttcctctgatcaacaatcgtcgtctgagtgtgatggggactcgtccgatgagcca
tctgtggggtgtgtaccagagagcttggagtttaagaagagcccatcctcgtctcttcag
ctattcaacaaaataatgcagaagaatatgcaaagcaacgtgggatcgatacgtcatctt
ctctacacgtattgcgagtcgactttggtgaagctgtttgaggcgtactcgtcagggcca
tcatctagccttcgatcgggggaaagtagcatggacttggcactgagaaacttgagtgct
atagacactgtgaagaatcagttcatttcttttgcgaagtacttccttggtagtgtcgag
gacgatgatgctggtatttgtatcccacttgataatgagctgtccaagttgtatcgtggg
catctacgaactgttcacattgaggcaatgaaaacaactggtaccctcctgaggcacgaa
acttggcaactgacatcggttgatctccctcaacgcactatcaaccttgacaatgacgaa
aagaagtgcatgtgtagccacaccgaccaaggttgcggcgattgcagtggacaaaacaca
acaatgacagcgatatacgaggccgtgtgcaatcatctatcggagtttattcagaacaat
agtgctagttcagacaaactgttgattacgacaagggctgtccgcaacggatacaaattg
tgcgattggttcaaggaatatcttgacacgacaacggcttctgaccatgccactacacca
tacatcttcccacaacaactgcgagaatgcgtcgggcttgcttctaaagagtttgctgct
tgcgtattggaattcgcagagagaaagtcgtgtggagaattatgtctctcgttgctgaca
caaagttgcatgaatggactagtcaagtggacgggacgactgattgcggttggcaatgct
ttgccgtcggttgcaaacgacgtctcgtatgccattaccacactatttgacctgtatatt
ctcacggtgttcaggatgtgtgctcgcaatagcaggaacgaagatgtgttggtggggctg
agacgaggatcttcctctttcgacggttcaaacggagtgaaatccaactcggtatcgttg
acaattgaggctgatatatgtgctccattacctcgtgaagtgagagtatttgaaccagtt
caacactttgtcactactggtagaagcagattggagaacattgtcaatctggacagattt
gagtcggccaatgatatgggcgtcctgtctccccggtctctgaacgagttgaagaatgca
tcgaggcggttagagaaggacacaggagctgccgcgagctgtctctttgctgctattttg
attgatgtcgcaagcaaggcgtttcagaagagtattggaagtgccaacgaagagtcattt
gattcagaagaagaaagttgccgtatcgattctcttgaaacttatgcattagatgcaatc
tcgatggctccacttttgactcaacaatcatgtcgtttggcgtgtgttcactcaatctct
gggaaggagctcatatttcaaatcatttgcgttggcaaggcgtgggaggatcgcgatatt
atggaacattccaatgcgtacgttgatgacctccttgaacgatgtggagagatttggggg
cacttatcgtcttccagcttgccacaatctgtgttgaaatacgtctggaatcagttggta
cgatcggcatttctcactctgcaggagggattctccaaaatctcaaactgttccacggaa
ggacgttcattgatgagtatggatttggctactctctcacacgggctgatatcagacaca
atcaaagcaaacctcgaagaggcctatccaacaattagtcctcctccagattcatgtcgc
gaagaggtaatgagatacgttgatgccttcatcaaagtattctattatcccgatgaagat
actctcgattggatccgtgaaaatgctgggaactatcactttgagcacagcctatcgctg
gtcacagtcaagtgtgcttcaggatgcgaaggtagcagcttttgggctgcaaggaaagac
gttgtcagagagatctatcgtgagcttaagctgtaa
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integrated database retrieval system
