Thalassiosira pseudonana: THAPSDRAFT_22417
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Entry
THAPSDRAFT_22417 CDS
T01078
Name
(RefSeq) predicted protein
KO
K15264
25S rRNA (cytosine2278-C5)-methyltransferase [EC:
2.1.1.311
]
Organism
tps
Thalassiosira pseudonana
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tps03009
]
THAPSDRAFT_22417
Enzymes [BR:
tps01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.311 25S rRNA (cytosine2278-C5)-methyltransferase
THAPSDRAFT_22417
Ribosome biogenesis [BR:
tps03009
]
Eukaryotic type
Other ribosome biogenesis factors
THAPSDRAFT_22417
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Methyltr_RsmB-F
NSUN5_fdxn-like
NSUN5_N
ASPP2-like_RA
RASSF8-10_RA
RS_preATP-grasp-like
Motif
Other DBs
NCBI-GeneID:
7443769
NCBI-ProteinID:
XP_002289484
JGI:
22417
UniProt:
B8C089
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All DBs
Position
4:1885417..1887489
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AA seq
612 aa
AA seq
DB search
MSSSPYHEAGWMLNELLPSKTNSGGGPRKSLKSLVNKKGSPNKAAYATVCKTMQHLPAIN
SILNENNGKLHKAIGIDDVNSKGLLYVMIYELLFGKYKSIRGGGRLKRMIIKHENALRIE
ADQYAAKNGGVGAGVDEDGANFPRYVRVNTLRSTVAEMVDVLTKDLEDANGAKEGGKSTP
TDLKQTIYADAHVPDLLVMHPFTSSLLHQKHEAVKSGKVVLQDKSSCFSALVLARGNSNK
PLTSCDVIDACSAPGNKTCHLATLINDSIGATTDERPSKRKKKGKNDAKPMSTIFAFERS
STRFSLLQSRMQLFIPPVGDSNGISTQVAVVPTHADFLKADPNDTQLANVRAILLDPSCS
GSGIVNNPDRWMEDSNDTNESEKKRRIQSLANFQLVALKHAMSFPKVDRVVYSTCSINNE
ENEVVIGKALSETNNSDDNADDGDEWVLVAPDCLEHWPRRGNGGGVGGLSESQAKCLIRC
DGLGGDETNGFFVSYFERRKVRASSGGYKMDATTVADSVELPVYCGQFAIAEKEKKKVSP
TKISTDDDDSNTKKTKATGSEDVQPQKTAKKTTETKANDKSARKREKKMAWKKQQALKKA
QRLKVKEAKGEA
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgagcagctccccataccacgaagcaggttggatgctcaacgagctcctcccctccaaa
accaactcaggaggaggaccgcgcaagagtctcaaatctctcgtcaacaagaagggaagc
ccgaacaaggcagcctacgcaactgtctgcaagacgatgcaacatctcccagccatcaac
tccatattgaacgaaaacaacgggaaattgcacaaggcaatcggaatagatgatgtgaat
agcaagggactgttgtatgttatgatttacgagcttctttttgggaaatacaagtccata
cgtggtggggggagattgaagcgaatgattatcaagcatgaaaatgcactacgaattgaa
gctgatcagtatgctgcgaagaatggaggcgtcggtgcaggtgtagacgaggatggcgcg
aactttcctcggtatgttagagtgaatacacttcgatctaccgtcgctgaaatggttgat
gtgttgacgaaggatcttgaagatgccaatggtgcaaaggaaggtggaaagtcaacgcca
acagatctgaaacaaaccatctacgcagatgctcatgtacccgatctgctcgtaatgcat
ccattcacttcgtcattactgcaccagaagcacgaggctgtgaaatcgggtaaggttgta
ctgcaagacaagagctcttgtttctctgctttggtattagctcggggcaattccaacaag
ccactgacatcttgcgatgttattgatgcctgttctgcacccggaaacaagacctgtcat
cttgctacactgatcaacgattccattggtgctaccaccgacgaacgaccatcaaaaagg
aagaagaaaggaaagaacgatgcaaagcctatgtcaacgatattcgcatttgaacgatca
tctacgcgattcagtcttctccaaagtcgtatgcagttgttcattccaccagttggagac
agcaacggtatctctacgcaggtggcagttgttccgacgcatgcagactttctcaaggct
gatccaaacgatacacaacttgcaaatgttcgtgccattcttctggatccaagttgctct
ggaagtggaatagtcaacaatcctgatcgttggatggaagacagcaatgatacaaatgaa
tctgagaagaagaggaggattcaatctcttgccaacttccaattggttgcgttgaaacac
gccatgtcgtttccaaaggttgatcgtgttgtgtattcaacatgctctattaataatgaa
gaaaatgaagttgttatcggcaaggcactatccgagactaacaattcagatgataacgca
gatgatggagatgaatgggtgcttgttgcaccggattgtttagagcattggccacgtaga
ggcaatggaggtggagttggggggctatccgagagccaggcaaagtgtttgattcgctgt
gatggattgggtggagatgagacgaatggattcttcgtgagctattttgagaggaggaaa
gtgagagcgagcagtgggggatacaaaatggatgcaactacagttgcagactcggttgaa
ctaccagtgtactgtggccaatttgccattgccgaaaaggagaagaagaaagtatcacca
acaaaaatctcaacagatgatgacgattccaataccaaaaagactaaagcaactggttct
gaagacgttcaacctcaaaagacggcgaagaagacaacggaaaccaaggcaaatgacaag
tcggcaagaaagagggagaagaaaatggcatggaagaaacaacaggcgttgaagaaggct
cagcgattgaaggttaaagaagcaaagggtgaggcatag
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