Thalassiosira pseudonana: THAPSDRAFT_22437
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Entry
THAPSDRAFT_22437 CDS
T01078
Name
(RefSeq) predicted protein
KO
K12864
beta-catenin-like protein 1
Organism
tps
Thalassiosira pseudonana
Pathway
tps03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
THAPSDRAFT_22437
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tps03041
]
THAPSDRAFT_22437
Spliceosome [BR:
tps03041
]
Complex B
Other components
Prp19 complex
THAPSDRAFT_22437
Complex C
Prp19-CDC5 complex
THAPSDRAFT_22437
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CTNNBL
CHASE9
Arm
Motif
Other DBs
NCBI-GeneID:
7451350
NCBI-ProteinID:
XP_002289961
JGI:
22437
UniProt:
B8C0C9
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All DBs
Position
4:complement(1977813..1980242)
Genome browser
AA seq
725 aa
AA seq
DB search
MASKSSSVVDVLDRVIGLTTTTTDGAEFIASDKWRGSKPGYVFQTGELGTGYYLDGPTAV
KKRARSDDNDDDGGGGKRSSSVVRFDATKDTTHSIPPRPRPSKPQQLSGEQLLAQAEQLA
SEQPSPKLLELSPKGIQSAAHSLDKTLQRNQLLRAQYQDDPEKFMMNELALNDEIVSFQN
AAVDVSCYESVVECGVMGTFLTLLSHENSDVAISVIDVLVELLDTMLLQEDGKKGEGGAS
LDPVERARSIGILANAFVDGCGLELITSNLGRFDETVEEDAKGIEDSLTLVESLLDLDRS
GILQRASGKEKPLPSVVSCICNQTTFVAWLFGRIDKKESDADHAATANATISPAVLKLHS
SEVLSSILQHEDYSMQRCGRALAVLPKYASAFDDSDENPAAKSNGEGNNVLDGMEILLLS
IAAYRKTDPQIEVECEFLENVFDSLAASLMREDNVADFVEKEGIELMLRCVREKVHSGGG
ALKVLNFALSGAGNGSNDAYKKACETFVHVGGLKILFPLYMARKSAIPCPATCSEGGSNL
AKKGMTKENGGAVSKRAKRAAHARKKWLAEVEHNAIYIMYALTRYIGKDSQYDAHARLLV
KFVEDDCEKCDRTIELCLKFDEKARIAEYQYFRSDEAEEAEQAGVDIELAALDAKLRGGG
DMFHRLCAILSFACIGSTRSHGHVRDQLKLQGSGISVIKEGLKEFDSLLAIGPQKTQVEQ
YLSEI
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atggcatccaaatccagcagcgtagtagacgtcctagatagagtcatcgggctcaccacc
accaccaccgacggagctgagttcatcgcctcagacaaatggagaggctccaaaccaggc
tacgtattccaaacgggagagttgggcacgggttactatcttgacggccctaccgctgtc
aagaagcgagctcggtccgacgacaacgatgacgacggaggaggaggcaaacgatcctcc
tcggtagtccgcttcgacgccacaaaagacaccacacactccatacccccccgtccccgt
ccgtccaaaccacaacaactgtctggagaacaactcctcgcccaagcagaacaactcgcc
tccgaacaaccatctcccaaactactcgaactatctcccaaggggatacagtccgcggca
catagtctcgacaaaacactgcagcggaatcaattgttgagagctcaatatcaagatgat
cccgagaagttcatgatgaatgaattagcgttgaatgatgagattgttagttttcaaaat
gccgcggtggatgtatcgtgttatgagagtgtggtggagtgcggtgtgatgggtactttc
ttgacgttgttgagtcatgagaatagtgatgtggcgattagtgttattgatgttcttgtg
gagttgctggatacaatgttgttgcaggaggatggtaaaaaaggagaaggaggagcatca
ttggatccagtggaacgagcacgaagtattggcatattggcaaatgcctttgttgacggg
tgtggattggaattaatcacctccaacttgggaaggtttgatgaaacagtcgaagaagat
gcaaagggtattgaagactcgcttacgttggttgaatcattgttggatctagacagatcg
gggatattacaacgtgctagtgggaaggagaaaccgcttccttccgtggtatcgtgcatt
tgcaaccaaaccaccttcgtcgcgtggttgtttggtcgtattgacaagaaggagagtgat
gccgatcatgctgctacggcgaatgcaaccatctcaccggcggtattgaaactacattcg
tctgaggtattgtcgtctattctccagcatgaggattattcaatgcagcggtgtgggagg
gcattggctgtgcttccaaagtatgcttcggcgtttgacgattcggatgaaaatccagct
gcaaagtccaatggtgaggggaataatgtactggatggcatggaaatattgctattgtcc
attgcagcgtacagaaagacggatcctcagattgaagtagagtgcgagtttttggagaat
gtgtttgactctcttgctgcttctttgatgcgagaagacaatgttgcagactttgtggag
aaggagggcattgagttgatgctaagatgtgtccgtgaaaaggttcattcgggaggaggg
gctctgaaagttctcaatttcgcactctcgggagcaggcaacgggtcaaatgatgcctac
aagaaggcatgtgagacattcgtacacgtcggtggactcaagatattgttccctctctac
atggctcgaaaatcggcaattccatgtccagcaacatgcagtgagggtgggagtaatctt
gcaaagaagggaatgaccaaggagaatggaggagcagtgagcaaacgtgcaaagagagcg
gctcatgcgaggaagaagtggttggcggaggtggagcacaatgcgatttacatcatgtat
gcattgactaggtatattgggaaggattcgcagtatgatgctcatgcgaggcttttggtc
aagtttgttgaagatgattgtgaaaaatgcgataggacgatagagttatgtctgaaattt
gatgaaaaggctcgtattgccgagtaccaatactttcgcagcgatgaagccgaggaggca
gagcaagccggagttgacattgaactggcagcacttgatgccaagttgaggggcggcgga
gacatgttccatcggttgtgtgccatcttgtcctttgcttgcattggctcgacacgttcg
cacggacatgttcgagaccagttgaagcttcaaggatctggtatcagtgtgatcaaagaa
gggttgaaggagtttgattctttactcgccattggtcctcagaaaacacaggttgaacaa
tacctgtcggagatataa
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