Thalassiosira pseudonana: THAPSDRAFT_22526
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Entry
THAPSDRAFT_22526 CDS
T01078
Name
(RefSeq) ABC transporter
KO
K05658
ATP-binding cassette, subfamily B (MDR/TAP), member 1 [EC:
7.6.2.2
]
Organism
tps
Thalassiosira pseudonana
Pathway
tps02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
THAPSDRAFT_22526
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
tps02000
]
THAPSDRAFT_22526
04147 Exosome [BR:
tps04147
]
THAPSDRAFT_22526
04090 CD molecules [BR:
tps04090
]
THAPSDRAFT_22526
Enzymes [BR:
tps01000
]
7. Translocases
7.6 Catalysing the translocation of other compounds
7.6.2 Linked to the hydrolysis of a nucleoside triphosphate
7.6.2.2 ABC-type xenobiotic transporter
THAPSDRAFT_22526
Transporters [BR:
tps02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB1, 4, 5 subgroups
THAPSDRAFT_22526
Exosome [BR:
tps04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
THAPSDRAFT_22526
CD molecules [BR:
tps04090
]
Proteins
THAPSDRAFT_22526
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
SMC_N
ABC_ATPase
RsgA_GTPase
AAA
AAA_29
AAA_21
AAA_15
AAA_22
nSTAND1
AAA_23
ATP-synt_ab
NB-ARC
PRK
AAA_28
DUF2207_C
Motif
Other DBs
NCBI-GeneID:
7447246
NCBI-ProteinID:
XP_002290494
JGI:
22526
UniProt:
B8C1N1
LinkDB
All DBs
Position
5:complement(92299..97461)
Genome browser
AA seq
1409 aa
AA seq
DB search
MGNGDTPTNINTTIKSTTASKTATKEAQQPLASLADVFSFSSATPEHSLTYRRTRPFLVL
GLVSSFVTGLAYPVMIFLFARVFEKFTVEIGGDSFMDGIRQMAYTFMILGVVIFLSMSLQ
NTLLDTAATDMAYTFQRTYFSLLLQQDTAYFDLTDVAGTAQMIGTQGAKFKKGIGRKLGE
VAYAFYASWEVSLVILATLPFIAFSGAFLMKMIGNQSSDSAKGYQRAGEIAYAAVSGIRT
ILSLNAVKVTIDKYQIATKEARDKAAKREWILGLAHGSIMASMLLSYLAVTLFGFWILYD
AIVQTGCDPSNAIPTNETCRISGMDVFGSLMGVSVAGMGLPQINSMITCLAEARSAAYPV
ILLRKRCEGVFNDDYDINLLLEDTVVEDNGHGSAAGTTIEDKDEKESISPDALETTHHKK
RIPANKMPPYVIDSSSSDGLKPATCEGNIELCNVSFTYPSRPQAKVLDGLSLNIESGKTV
AIVGASGCGKSSIMQLIERFYDVDEDEEAGDIEQGNRTSGIKLDGVDIRDLNVQWLRDQM
GIVSQEPKLFAKTIRDNIAYGLASSSKEPTQSEIEEAAMNANAHSFIMEFPDGYDTLVGD
AGSQLSGGQKQRVAIARILLRRPKILLLDEATSALDSESERTVQKAIDNLLSKEKALSSQ
SQMTTLVVAHRLSTIKNADVIAVCEKGRIVEKGAHEELMAIEGGKYRTLVEAQTTPPKSE
VESSAHGSESNDDDRRVSAFVPKDHKDFSDATNEIVLKDVHFHYPSRPDTSVFRGVNLAV
RRGETLAIVGQSGQGKSTIMQLIERYYDPISGVVEFEGRDLKDINIGYLRDCCGLVSQEP
TLFNTTIAENIKYGKPDATDEEMYEAAKKANAHDFISSFPDGYNTHLGETALAVSGGQKQ
RIAIARAIIKQPRLLLLDEATSALDTASEKVVQEALDKLMEDRSRTTIVIAHRLSTIKNA
DRIAYIGDGKVREIGTHEELMANPDSKYRRLHAFQNMNLHDLEEKHGEKASTKIKASNKK
EGNIDEGGKDTGKEKKYASKAKLLAKSDGGLFVVGSIGAIFAGLMFPGWGIIFAYMVEYL
YYPVFPCDEEAGIMPPEPFLSCNGYHQYIKDDMQSMSFKLTYAWIAIIAAVVIGNMLVSY
GFGTASENINKRVRDSAFASLLRQEIAFFDTFTVGTLTSRLSDDAALIHSFSGEPIRQLV
LSVSSVFVGIVVSFVYMWPFALVALFTVPAMAFGGAMEMQMYMGEDLGAQKDEEGGPGSV
AIESLLNIRTVSSLSLQKTRLDDYTKAMTKGDTHIALTNFKKGSLVAIGQLIQMWGMALF
FWWGGWLLNKYPETFEYRDFLISVFSLLYGISGIAIAFQGATDRGKAKEAAERIFDLVER
ESAIDPLSETGYKKLGYVSVESRVSAYSC
NT seq
4230 nt
NT seq
+upstream
nt +downstream
nt
atgggtaacggcgacacccccaccaacatcaacacaaccatcaaatccaccaccgcctcc
aagaccgctacaaaagaagcccaacaacccctagcatccctcgcagatgtcttctccttc
tcctccgcaacacccgaacactccctaacataccgtcgcactcgtccctttctcgtcctt
ggacttgttagttcgtttgtgactgggttggcatatccggtgatgatatttctatttgcg
agggtgtttgagaagtttacggtggagattggtggggatagtttcatggatgggattaga
cagatggcgtataccttcatgatattgggagtcgtcatctttctaagcatgtccctccaa
aacactcttctagacacagcagccaccgacatggcctacacctttcaacgcacttacttc
tcgttgttacttcaacaagacaccgcctactttgatctgacggatgtggctggtactgct
cagatgattggaacgcaaggagccaagttcaagaagggcattgggaggaagctgggtgaa
gttgcatatgcattttatgcctcatgggaagtatcgttggtgatattagctacgctcccc
ttcatcgccttcagtggagcatttctcatgaaaatgattggcaatcagagttcagactct
gccaaaggatatcaacgtgccggagagattgcatatgcggccgtctctgggatccgtacc
atcttgagtttgaacgcagtaaaagtgaccattgacaaatatcagattgcgacaaaagag
gctcgtgacaaagcagcaaaacgtgagtggattcttggactcgcacacggtagtatcatg
gccagtatgttgctgtcgtatctggctgtcacgttgtttggattttggatattgtacgat
gcaattgtccagacaggatgcgatccttccaacgcaattcctactaatgaaacatgtagg
atatcgggtatggacgtgtttgggtcgttaatgggagtatcagtcgcaggtatggggtta
cctcagatcaattcaatgataacatgtctagcagaggcaaggagtgctgcgtatcctgtc
attctactaaggaaaagatgtgaaggtgtcttcaacgatgattatgatatcaatttgcta
ttggaagacactgttgttgaagacaatggacatggatcggctgcagggactacaatcgaa
gataaagacgagaaggaaagtattagccctgatgcccttgaaacaacgcatcacaagaag
cgtatccccgccaacaaaatgccaccatacgtcattgattcatcgtcttctgatggactc
aaacctgcaacatgcgagggcaacattgaattatgcaacgtctcgtttacgtacccatcc
agacctcaggccaaagtattggacggactttcgttgaacattgaaagtggaaagactgtg
gctatcgtcggtgcttctggctgcgggaaatcgtccatcatgcagttgattgaacgattt
tacgatgtagacgaagatgaagaagccggtgatattgaacagggcaatcgaacgagtggc
atcaagttggatggtgttgatatacgcgatttgaacgttcagtggctaagagaccagatg
ggcattgtcagccaagagcctaagcttttcgcgaagacaatcagagataatattgcatat
ggattggctagctcttccaaggagcctacacagtctgagattgaagaagctgcaatgaat
gctaacgcacattcgtttatcatggagtttcccgatggctatgatactctcgttggcgac
gctggttcccaactgtcgggtggacagaaacagagggttgcaatagctcgcatcctcttg
cgtcgtcctaagatccttttgcttgacgaagctacatctgcattggattccgaatccgag
cgaacggtccagaaggctatcgacaatcttctctccaaggaaaaggcactatccagtcag
tctcaaatgactacacttgtagtggcacatcgtctatcaacaatcaagaacgcagatgtt
attgcagtgtgcgagaaaggaagaatcgtcgagaagggagctcatgaggagctgatggcg
attgaaggagggaagtatcgtactctcgtcgaagcacagacaacacctccaaagtccgag
gtggaaagcagtgctcatggttccgaatccaacgatgacgatcgtcgtgtcagtgcattc
gtaccaaaagatcacaaagacttttccgatgcaacgaatgagattgttttgaaggacgtt
cactttcattatccatcacgacctgacactagtgtgtttcgtggagtgaatcttgctgtt
aggcgaggagagactcttgcaattgtaggtcaaagtggccaaggcaagagtacaatcatg
caacttattgagcgatactacgaccccatctctggtgtagtagagttcgaggggcgtgat
ttgaaggacatcaatattggatacctccgtgattgctgtggtttggtttcgcaggagccg
actctctttaatactactatcgccgagaatataaagtacgggaagcccgatgccactgac
gaggagatgtacgaagccgcaaagaaggctaatgcccacgacttcattagctcatttcct
gatgggtataatacacatttgggggagactgctttagccgttagtggagggcaaaagcag
agaattgccattgcccgtgctatcatcaaacaacctcgactactcctgttggatgaagcg
acgtctgcgctagacactgcttccgaaaaggtagtccaagaggcgttggataagctaatg
gaggatcgcagccgtacaacgatagtcattgctcatcgtctcagcactatcaagaatgca
gaccgcatcgcttacattggtgatgggaaggttagagagatcggtacccacgaagagcta
atggcgaaccccgacagcaaatacagaagactccacgcctttcagaacatgaacctccat
gacttggaagaaaagcacggagagaaggcttcgaccaagatcaaggcttcaaacaagaaa
gaaggcaacattgacgagggggggaaagacactgggaaagaaaagaagtatgcatccaaa
gccaaacttcttgccaagagcgacggaggactcttcgtcgtcggcagtatcggagccatc
tttgctggattgatgtttccaggttggggaattatctttgcctacatggtagagtacttg
tactaccccgtctttccttgcgatgaagaagcaggaatcatgccacctgagccatttttg
tcatgcaatggataccatcagtatatcaaagatgacatgcaaagcatgtcgttcaaactg
acgtatgcttggattgcaatcatcgctgccgttgtaattggaaacatgcttgtaagttac
ggatttggtactgcaagtgagaatatcaacaaacgtgtcagagattcagcctttgctagt
cttcttcgtcaagagattgcattctttgacacgttcaccgttgggaccttgacttctcgt
ctttccgatgacgcagctttgattcacagcttttcgggagagcctattcgccagctcgta
ttgagtgtatctagtgtcttcgttggcatcgtcgtctctttcgtttacatgtggccattc
gccttggttgctttgtttacagtaccggcaatggcattcggtggtgcaatggagatgcaa
atgtacatgggtgaagaccttggagctcaaaaggatgaagagggaggtccgggatctgtc
gccatagagtctctcctcaacattcgtacagtatcttctctttccttgcaaaagactcgt
ctggatgattacacaaaggcgatgacaaagggcgacactcacattgcactgacaaacttc
aagaaaggatcactcgtcgccatcggacaactcatacaaatgtggggaatggccttgttt
ttctggtggggaggatggttgctcaacaaataccctgagacttttgaatatcgcgacttt
ctcatttcggtcttttcgttgttgtatggtatttctggaattgcaattgctttccaagga
gcgactgatagaggcaaggcaaaggaagccgccgaaaggatctttgatcttgtcgagcga
gagagtgctattgacccattgtctgagacggggtacaagaagcttggatatgtgtctgtt
gagagcagagtttctgcttacagttgttga
DBGET
integrated database retrieval system
