Thalassiosira pseudonana: THAPSDRAFT_22618
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Entry
THAPSDRAFT_22618 CDS
T01078
Name
(RefSeq) predicted protein
KO
K13095
splicing factor 1
Organism
tps
Thalassiosira pseudonana
Pathway
tps03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
THAPSDRAFT_22618
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tps03041
]
THAPSDRAFT_22618
Spliceosome [BR:
tps03041
]
Complex A
Other components
Complex A specific factors
THAPSDRAFT_22618
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KH-I_KHDC4-BBP
SF1-HH
KH_1
KH_12
KH_PNO1_2nd
PHD_4
Motif
Other DBs
NCBI-GeneID:
7451763
NCBI-ProteinID:
XP_002290130
JGI:
22618
UniProt:
B8C249
LinkDB
All DBs
Position
5:<493826..496379
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AA seq
779 aa
AA seq
DB search
MTSGQDAEEAAELMATMRAEHVPMKSWYNNPSHIGLHSKYGDFPLFWQDLRGWDGWKEVR
REYLRFTEGGGRSLESAQAQATDGIDADGGRKKRSRWADEGEEGAADADGTSASAAALAA
SSSGPPERKRKSRWGRGRDETPKPSINAAATTQPPPIQDPVMAALGLSSTPSTATLSTTA
QSLLPSNLSSSVPEHHRAELNTLQERLRKANSRLTNLEAEAAKIDALPRGHPDRSPSPPP
IYGPDGTRKNTRANRWRETYTEERAVCLERIMELVPTMRPPGFLTKRKRSRKIHIPVEDH
PTYNFIGLIIGPRGKTQKEMENKTGCKIAIRGKGSVKEGAKGRRNGQPMEGDDEPLHVVI
TGDDPAAIDAAAEMVTSMLVVIDDEKNIHKQNQLRELALLNGTLKDEEWCITCGEKGHKN
YECPKRFALSSKSAATLQIKCAICGDTSHPTRDCRMKPSAAAEEGMANQIKKERELDSDY
SAFMAELDGRPVKEEAGEDCGGKESGGTAVSTASVPPRESVLTIIQPARVVKVGEETVEA
SVVVPPVASLPAANSILTIIQPARVVKVGEEATTDTTGAAAAVQPIASGITTISSTVPSG
VATISSTFPTSSSAAHPIASGVTTISSATLPPAPTTSLPLPPSGEPPASLTSGTGVIKAP
DGAMVATGTTLPLPPPPPPPAAVGGQFPPPQMVYPGQQWPGVPPPPPPCAYPNQYQQGGY
HQPQYGQQPPQQQQWGAGGYNAANGQGNNGAAWNPNGYYAGAGDANGAGGFNWWDSSDS
NT seq
2340 nt
NT seq
+upstream
nt +downstream
nt
atgacatcagggcaagacgccgaagaagcagccgaactaatggcaaccatgcgagccgaa
cacgtccccatgaaatcgtggtacaacaacccctcccacattggtctacacagtaaatac
ggtgattttccattgttttggcaggatttgaggggctgggatggatggaaggaggtcagg
agggagtatttgaggtttacggagggcggcggtaggtcactggagagtgcacaggctcaa
gctactgatgggattgatgctgatggtggacggaagaagcgttcacgatgggccgatgaa
ggcgaagagggtgccgccgacgcagatggcacctccgcgtccgctgcggctctggcagcg
tcgtcgtctggtccgccggaacgcaagcggaaatcacgatgggggcgcggccgagacgaa
acacccaaaccatccatcaacgcagctgcaacaactcaacctccgccaatccaagatccc
gtcatggcagcactcggtctctcctccactccctccaccgcgaccctatcaacaacagcc
caatccctcctcccatccaacctctcctcctccgttccagaacaccatcgtgccgagttg
aacaccctccaagaacgtctacgcaaggccaactcacgcctcaccaatctcgaagccgag
gcagccaaaatcgacgccctcccccgaggacaccccgatcgctccccctcccccccaccc
atctacggacccgacggtactcgtaagaatacacgtgccaatcgatggagggagacgtat
acagaagaaagagccgtttgtttagaaaggattatggagttggtacccaccatgagaccc
ccgggattcttaaccaagaggaaacgaagtagaaagattcacattccggtggaagatcat
ccgacgtataacttcatcgggttgattatcggtcctagaggaaaaacacagaaggaaatg
gagaataagactgggtgtaagattgccattcgagggaaggggagtgtcaaagagggtgcc
aaggggaggaggaatggacaacccatggaaggagatgatgaaccgcttcatgttgtgatt
acgggggatgatcctgctgccatcgacgcggctgcggaaatggtcacttcgatgcttgtt
gtgattgacgacgagaagaatattcacaagcagaatcaactacgtgaattggcattgttg
aatggaacactcaaagatgaagaatggtgcatcacgtgtggagaaaaggggcataagaac
tacgagtgtccgaaacgatttgcactgagtagcaagagtgccgcgacgttgcaaatcaag
tgtgcgatttgtggggatacgagtcatcccacgagggattgtaggatgaagcccagtgcg
gcggcggaggagggaatggcgaatcagattaagaaggagagggagctggatagtgattat
agtgcttttatggccgagttggatggtaggcctgtgaaggaagaagcgggtgaggattgt
ggtgggaaggagagtggaggtactgctgtgtcgacggcgtctgtgcctccgagggagtct
gtgttgacgatcattcaacctgcgagagtggtcaaggtgggagaagagacggtggaagct
tccgtggtagtacctccggtagcttcacttcctgcggcgaactctatattgacaatcatt
cagcctgcaagggttgtcaaagttggtgaagaggcgacaacagatacaacaggagcagca
gcggctgtacaacccattgcatcgggcatcacgacgatatcatcaactgttcctagcgga
gtcgcaacaatttcctcaaccttcccaacttcatcatcagcggcacatcccatagcatcg
ggagttactacgatatcttctgccacgcttcctcccgctccaaccacgtctttgcccctt
cctccgtcaggagagccacccgcctcgttaacgagtggtactggtgtgatcaaagcaccc
gatggagcgatggttgcgacgggaacaactttaccattaccaccaccaccgccgcctccg
gcagctgttggcggccaatttcctccgcctcaaatggtgtatcctggacaacagtggccc
ggtgtacctccacctcctccgccttgtgcttacccaaatcagtatcaacaaggaggatac
catcagccgcaatacggacaacaaccaccgcagcaacaacaatggggtgccggaggatac
aatgcagcaaatggacaaggaaacaatggagctgcgtggaacccaaatggatactacgca
ggagctggtgatgcaaatggagcagggggcttcaactggtgggattctagtgattcctag
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