Thalassiosira pseudonana: THAPSDRAFT_22623
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Entry
THAPSDRAFT_22623 CDS
T01078
Name
(RefSeq) predicted protein
KO
K13210
far upstream element-binding protein
Organism
tps
Thalassiosira pseudonana
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tps03019
]
THAPSDRAFT_22623
03041 Spliceosome [BR:
tps03041
]
THAPSDRAFT_22623
Messenger RNA biogenesis [BR:
tps03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Trans-acting binding proteins
THAPSDRAFT_22623
Spliceosome [BR:
tps03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
THAPSDRAFT_22623
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
KH_1
WW
KH-I_KHDC4-BBP
KH_2
KH_PNO1_2nd
KH_PARP14_8
MOEP19
KH_KHD4_2nd
CEP164_N
WW_TCERG1
Motif
Other DBs
NCBI-GeneID:
7451766
NCBI-ProteinID:
XP_002290579
JGI:
22623
UniProt:
B8C257
LinkDB
All DBs
Position
5:complement(517321..520344)
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AA seq
649 aa
AA seq
DB search
MAATRKRKSTRTPAKSKKAKAAEEEAEEAAVPDETTVDDTAADGAAAATTTTDGGEEEDD
DVPPTPMINVDSKEQDAAAALTALMGGTPKKVLVETNSTEIKGDVNENSGNGVDPAAEHT
KKEDSAPLKQEAVAAEGNPNAPGEETPTVMHSAVKSENPTQTTSNPGSNPGNTNPEVVAN
PPTTQPTAAPPIAAAPQVVMAPAPSAVPSGVPTLATPAAPVVAAVSAPVEQEFEETGQVS
MLYVGRVIGKGGEMIRDLQARSGCRIDVDQNVPEGAPRIITYRGTRNAIDFAKQLISILC
TEHGKEAELPLGQAMKKLVLVPSTVIGKIIGRGGEMIRELQSKSMAKIQVDHSGAGMDSQ
QRQITVTGTTQAVIKAEEMILFLAANPAVDAQESLALLIRDKTMNGGVWGSGPPYVNLPN
QGQGMADTGGGMYGGGAYGAVQPAAAAYGAYGAQQPAVAAYGGVGGIEHELYPCSKMYMG
RVIGQKGVTINDLQKRSGCDIQINQNVPVGMDCEINIKGSRQGIEMAKQMIQEIIELGPN
HSYAGGRGGGDQYGQHGGYQQQAYQQGGYGNQAYPAQSYPPQQQYGMQQQPYGGLQMYQQ
QTYGQPQMYGAPMPPALTSPWRSATAADGQVYYYNQNTGETQWDKPPGL
NT seq
1950 nt
NT seq
+upstream
nt +downstream
nt
atggcagccacacgtaagcgtaaatcaaccagaacacccgccaaatccaaaaaggccaag
gccgccgaagaagaagccgaggaggccgcggtgcccgacgagacgacggtggacgacacc
gccgccgatggtgcggcggctgccacaaccaccaccgatgggggagaagaggaggatgac
gacgtgccgcccaccccaatgataaatgtcgattccaaagagcaagatgctgctgcggca
cttactgctttgatgggtgggacaccgaagaaggttctcgtggagactaattctacagag
atcaaaggggacgttaacgagaacagtggcaacggcgttgatcctgctgctgaacatacc
aagaaggaagacagcgctcctttgaaacaagaggcagttgctgctgaggggaatccaaat
gctcccggagaagaaactcctacagtcatgcattccgcagtgaaatcggagaaccctaca
caaactacaagcaatcctgggagtaacccaggcaataccaacccagaagtggttgcgaat
ccaccgactacacaaccaaccgcagctccacccatcgctgcagcgcctcaagtggtaatg
gcaccggctccctcggccgtcccatccggtgtacccacgcttgccacacctgctgctcca
gtagtcgcggcagtttcagcaccagtggaacaagagtttgaagagactggccaagtatcc
atgctttacgtcggtcgtgtcattggaaagggaggggagatgattcgtgatcttcaggct
cgttcagggtgtcgtattgatgtggatcagaatgttcccgagggagctcctcgtatcatc
acgtatcgcggtactcgtaacgcgattgactttgcgaaacaactcatctccatcttgtgt
accgagcatggcaaggaggctgagcttccgctggggcaggccatgaagaagttagttctt
gttccgagtactgtgattggaaagattattgggaggggaggggagatgattcgtgagttg
caaagtaagagtatggccaagattcaggtagatcattctggagctgggatggattctcaa
caacgtcaaatcactgtcactgggaccactcaagctgtcatcaaagcagaagagatgatt
ctgtttctggctgcgaaccctgcggtggatgctcaagaatcactcgccttgctgattaga
gacaaaaccatgaatggaggtgtgtggggaagtggtcctccttacgtcaatcttcctaat
cagggacagggcatggcagacacgggcggcggtatgtacggcgggggagcgtatggagca
gtgcagccggccgctgcagcgtacggtgcctatggtgctcaacagccagcagtagcagca
tacggaggagtgggtgggattgaacatgagttgtatccctgctccaagatgtacatggga
cgtgtcattggtcagaaaggagtcactatcaacgacttgcagaagcgttcggggtgtgat
attcaaatcaaccagaatgtccctgtgggtatggattgcgagattaacattaaagggtcc
agacagggcattgaaatggccaaacaaatgattcaagagattattgagttgggacccaat
cactcgtatgctggtggacgcggaggcggagatcaatacggccagcatggaggctaccag
cagcaagcataccaacaaggtggatacggaaaccaagcctatccagctcagtcttaccca
cctcagcagcagtacggcatgcagcagcagccctacggcggactgcaaatgtatcaacaa
cagacttatggtcagccccaaatgtacggcgcgcccatgcctcccgccctgacatctcct
tggcgtagtgcaactgctgccgacgggcaagtctattactacaaccagaacacgggtgaa
acgcagtgggacaagccccctggattgtaa
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