Thalassiosira pseudonana: THAPSDRAFT_22897
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Entry
THAPSDRAFT_22897 CDS
T01078
Name
(RefSeq) predicted protein
KO
K11835
ubiquitin carboxyl-terminal hydrolase 4/11 [EC:
3.4.19.12
]
Organism
tps
Thalassiosira pseudonana
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
tps01002
]
THAPSDRAFT_22897
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tps04121
]
THAPSDRAFT_22897
Enzymes [BR:
tps01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
THAPSDRAFT_22897
Peptidases and inhibitors [BR:
tps01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
THAPSDRAFT_22897
Ubiquitin system [BR:
tps04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
THAPSDRAFT_22897
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
DUSP
zf-MYND
USP7_C2
Motif
Other DBs
NCBI-GeneID:
7444892
NCBI-ProteinID:
XP_002290860
JGI:
22897
UniProt:
B8C3S5
LinkDB
All DBs
Position
5:complement(1970400..1974357)
Genome browser
AA seq
1078 aa
AA seq
DB search
MSSRASCETSASITSSNLAQSIRYKEDGNRFFNLKHYTAGIACYRRGLEELPCAIADKSS
NNRKSKEERDVEVALRSNLALLLLRLAEETTDNTAQSHEQRHQWYLECETECTTVLEVNP
SKAKIHYRRGHARSLLADCCKRDPLKQSEYWSGAESDFKQCEEVLQAQLEKNKWNDNVPT
QSTKDILKDIMAARKALQQIHSSRATVGRQKTKPKILASGGKQSFVVHTPTNDEMEVNAT
PNTKFVSSNLTTGYTPEHNRPTPIEQKEFIASLLSRQCSPNDESSIVATQTPIAGEAFFL
INMDWWQKWCQYVGFFTMYGGSDNKNNQNGESTRGASSKRELEEIDEMNARVLQLLPPGA
TIPQYIEMDRKDAITPTKKEDTHQQSSNVSLSSSSSSDDDSVTEGTMRISPGVIDNSSLI
LPDTNGVWYSKQCIEGNSNEDNKTVLLKNYLVRGYHFEVLPREAFAAFRCWYGETSPTLF
RRATIMNELPWISQKKQSTCLSVRLPLYTEQWNVILHNPNGQHLRTDESSTALCGACRAP
CATRLTCSKCHSVRYCRKECQRSHWSPYHKAVCRILSEQQQSGDANPNRGLIPESKVWGR
VGLNNLGNTCFMSSAVQCIGHVAPLTRYFLRDSFLDDINEHNALGTGGKVANAYAFTMKA
IWMGGHQHRSISPSALKRAIELFAPQFSGVQQQDSAEFVTYLLDALHEDTNRVRHPPYVE
FPDVDLSKKLSISGAEAWDKHCIRNSSEVFDTFYGLYKNACVCPICDTSYVKFETFNHLT
LEIPQRKAFDLEVILVRDFANTEEVSLPLRYCVSVPQDCTINDLKASLSKLSGVRRQMLA
ICSMKDNRISKLHKNNDHVSLLLNGGQIFAYEVTPVEEEDRTSFDSPEIHAFVNQCIIID
NKTRNLGVPFFVSFGKRIGCEEVYNRVWNYVKPFVIVGKEDDAPFQAMVKSKMRIRVVDQ
YFTTKDNITTQILPQSSSEQLVELLGYQIEDNVMELSLEWADIIDINSQPVHSGLVHISN
FYQVLNHSCVEEYHQRTQQHQNHSNVMTLDDCIASFIRPEWLDSENKRSRYGDFQTFS
NT seq
3237 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcacgtgcctcttgtgaaaccagcgcctccatcacgtcatccaatttagcacaa
tccatacgctacaaagaggatggcaatcgcttcttcaatctaaaacattacactgcaggt
attgcatgctaccgccgtggccttgaggagctaccgtgtgccatcgccgacaagtccagc
aacaacaggaaatcaaaggaggagagagatgtcgaagtagctttacgatccaaccttgca
ctgttgctgcttaggcttgccgaagaaacgacagataacacggctcaatctcacgagcaa
cggcaccagtggtatcttgaatgcgaaacagagtgcacaactgtattagaagtgaatcca
tcaaaggcaaagattcactaccgcagaggtcacgcacgttctctcttggcagattgttgc
aaaagggacccgctgaagcagtctgaatattggtctggtgcagaatctgattttaagcaa
tgtgaagaagttctgcaagcacaattggaaaagaacaagtggaatgataatgtacccacg
caatcaacaaaagacatactgaaagatatcatggctgccagaaaggctctacagcagata
cattcttcaagggctactgtcggtaggcaaaaaacgaaaccaaagattcttgcctccggg
gggaaacaatcatttgtcgtacacactcccaccaatgacgagatggaagtaaatgccacc
cccaataccaagtttgtttcatcaaacttgacaactggctacacgcccgagcacaataga
cccactccaatagaacaaaaagaattcatcgcaagtttgctatcgcgccagtgctctccg
aatgacgaatcatcaattgtggcaactcaaactcctattgctggagaagctttctttctc
atcaacatggattggtggcaaaagtggtgccaatacgttggattcttcacgatgtacggg
ggaagcgacaataaaaacaatcagaacggagagagtactagaggagcaagcagtaagcga
gaacttgaagagatagatgagatgaatgcccgtgtcttgcaactgcttccaccaggagca
actatcccacagtacatcgaaatggacagaaaggatgcaatcacgcctacgaagaaggag
gatacccaccaacaatcttcaaatgtttcattgtcatcttcgtcgtcgtcggacgatgac
agtgtcacagaaggcactatgcgaatttctcctggcgtgatagacaattcgtcgttgatc
ctacccgacacaaacggagtttggtacagtaaacaatgcattgaggggaacagcaacgag
gacaacaaaacagttctattgaaaaattacttggtgagagggtatcactttgaagtgctt
ccacgagaagcattcgccgcttttcgttgttggtacggagagacgtctcctactttgttc
cgtcgagcaactattatgaacgagctgccgtggatatcgcaaaagaagcaatctacatgt
ctttctgtacgcttaccactctacactgagcagtggaatgttatcttacataatcccaat
gggcagcatctacgcaccgacgaaagtagcactgcattgtgtggtgcttgtcgagcgcct
tgtgctactcgattgacatgttcgaagtgccactccgttcgatactgcagaaaggaatgc
caacgaagtcattggtccccgtaccacaaagcagtctgccgcatactatcggagcaacaa
cagtcgggtgatgcaaatcccaacaggggattaattccggagagtaaagtttgggggagg
gtggggttgaacaatctcggcaacacttgcttcatgagttctgctgtccagtgcattggc
catgtagcgccgttgactcgttacttcttgagggatagctttcttgatgacatcaacgag
cacaacgctctcggaacaggaggcaaagtggcaaacgcttatgcattcacaatgaaagcg
atttggatgggaggtcatcagcacagaagcatcagtccttcagcattgaaacgggcgatc
gaactctttgctcctcagttctctggtgtgcagcagcaagattctgctgagtttgtcaca
tatctgctcgatgcattacatgaagatacaaatagagtgcggcaccctccgtatgttgag
ttccccgatgttgatttgagcaagaaactttcaataagcggagctgaggcatgggacaag
cattgcattcgcaactcaagcgaagtctttgacaccttctatgggttgtacaagaacgct
tgtgtctgtcccatctgtgatacatcttatgtaaagttcgaaacattcaatcacctcacc
ttggagataccgcaacggaaagcattcgacctcgaggtcattctcgttcgtgattttgcc
aatacagaggaggtgtctttacccttgaggtattgtgtatcggtgcctcaagattgcacc
atcaacgatttgaaagcttcactcagtaagttatctggagtgcgacgtcagatgttggct
atctgcagcatgaaggacaatcgtatatccaagctacacaagaacaacgatcatgtgtcg
ttgctgctaaatggaggtcagatattcgcctatgaggtaactcctgtcgaagaagaagac
cgaacaagtttcgattcgccggaaatccatgctttcgtcaaccagtgcatcatcatcgac
aacaaaacacgaaatcttggtgttcccttcttcgtgtcttttgggaagcgcattggatgt
gaggaggtatataacagggtatggaattacgtgaagccgtttgttattgtaggaaaagag
gacgacgcaccgtttcaagccatggtcaaatcaaagatgagaataagagttgttgatcag
tattttacaacgaaggacaacatcaccactcagatccttcctcaatcctctagcgagcag
ttggtggaattacttggctaccagattgaagacaacgtcatggaattatctcttgagtgg
gctgatatcattgacatcaattctcaaccagttcattccggattggttcacatatctaac
ttttatcaggttttgaatcattcatgcgtggaagagtatcatcaacgtactcagcaacac
cagaaccactccaatgtcatgacgctcgacgactgcattgcatccttcattcggcctgag
tggttggattccgagaacaaacggtcgcgttatggagacttccaaacgttctcgtaa
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integrated database retrieval system
