Thalassiosira pseudonana: THAPSDRAFT_22978
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Entry
THAPSDRAFT_22978 CDS
T01078
Name
(RefSeq) predicted protein
KO
K13205
A1 cistron-splicing factor AAR2
Organism
tps
Thalassiosira pseudonana
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tps03041
]
THAPSDRAFT_22978
Spliceosome [BR:
tps03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
THAPSDRAFT_22978
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAR2
Lipoprotein_6
Motif
Other DBs
NCBI-GeneID:
7448401
NCBI-ProteinID:
XP_002290944
JGI:
22978
UniProt:
B8C538
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Position
6:313312..315108
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AA seq
590 aa
AA seq
DB search
MIDDNSTIRGGCIVLIDAPPATSITLDGVTRVTPSTSTADKTSLSSSTPFNRGLFIVDNI
PSSAAPLDTSFHLLIVRCGRDLQKSSSNNGDCRSLPVGFVLTNPTATQSNSNHGYEWIFA
RRYKPETEEMSNEPLDELTLNNLMVAIGERGEWKRYVMPYEQFMGVNRGGSSRSNTITAW
KARALLVNQSYLMRRHDLYHGDKIVPSSDTSIDDALGDSTKSSVDGKPVSYPPIPCIDPN
VGARQLTQHSGTKVYLSGLSPEMRTWLLFGGAGSKDAVIGNNTSSPGEYVWKDVMRGHYG
REDANLNECQSESDFLADIQLSFLLFLFMECHASLEHWRDAVSMCSLSTVFPGTNSSQSN
SAVLQHPTFFLQLISILKSQMACIETEFFQEVDYSSGESNFLIAAMRRLCNACEMLDETN
ESSAELKKAVFKLQKLAMDRFHVKLTSQSSALGKGNNYEDDVDMEIDLSAPHNDTKSEDN
NARHDEKLEMNLDDESDDEDGPVIVSCDDVEASLARSCVEAVQAQKFHRDQSNLSAGNEK
HRQSYPLLFAAMSPQEDIVMTCARVLEEAKDVSLVRQAAAYLEEVEARRF
NT seq
1773 nt
NT seq
+upstream
nt +downstream
nt
atgattgacgacaatagcaccatcagaggaggatgtatcgtactcatcgacgcccctcca
gcgacatcaatcacccttgatggcgtaacacgtgtaactccttcaacgtcaaccgcggac
aaaacatcattatccagttcaactccgttcaaccgaggcctgttcatcgtcgacaacatc
ccttcatcagcagcaccattggatacctcatttcatttacttattgtacgatgtggaaga
gatttgcaaaagtcaagtagtaacaatggagattgtcgctctctccctgtaggctttgtc
ttgaccaatcccacagccacccaatcaaacagcaaccacggatatgaatggatatttgca
cgaagatacaagcctgaaacggaagaaatgtcaaatgagccattggacgagttgactttg
aataacttgatggtggctattggggagaggggagagtggaaacggtacgtaatgccgtat
gagcagttcatgggagtgaatcgtggtggtagttctaggagcaacactattactgcatgg
aaggcacgtgctttgttagtaaatcagtcatatctgatgagacgacatgatctttatcat
ggtgataagattgttccatcttcggacacatctatagatgatgctcttggtgacagtacc
aaatcaagcgttgacggcaaaccagtatcgtatccgcccataccatgcattgatccaaac
gttggtgcacgtcaacttacacagcattctggtacgaaggtttatctatctgggttgtcc
cctgaaatgagaacatggctgctatttggtggtgctggttcaaaagatgctgttattggt
aacaatacttcaagtcctggagagtatgtctggaaagatgtgatgcgtggacattatgga
agagaagacgctaacttgaatgaatgtcaaagtgaaagtgacttcctggcagacattcag
ctatccttccttctgtttctctttatggagtgtcatgcatcgttggagcattggagagac
gcagtgtcaatgtgttcgttatcaaccgtatttccaggcacaaactcttctcagagcaac
agcgccgtattgcaacacccaaccttctttctgcaactgatttcaatactgaagtctcaa
atggcttgcattgaaacggagttctttcaagaggtggattactcgtctggagagagtaac
tttctgattgctgcaatgagacgactgtgcaacgcctgcgagatgcttgatgaaacaaac
gagagcagtgctgaattgaaaaaggctgtgttcaagctgcagaagttggctatggatcgg
tttcacgtgaaacttacttctcagtcatcagcactcggaaagggaaacaattacgaagat
gatgttgacatggagattgacctatcagcaccacacaacgacactaaaagcgaagacaat
aatgcaaggcatgatgagaagttagaaatgaatttagacgatgagtctgacgacgaagac
ggccctgtgatcgtttcgtgcgatgatgtagaagcctctctcgctcgttcttgcgtggaa
gccgttcaggctcaaaagtttcacagagatcagtccaacttatcagctggcaacgagaaa
catcgtcaaagctatccactgctatttgcagcaatgtcaccgcaagaagatatagtgatg
acatgtgctcgtgtcttggaagaagcaaaggatgtatcactggttcgtcaagcagcagca
tatctggaagaagtagaagctagacgattctaa
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