Thalassiosira pseudonana: THAPSDRAFT_23187
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Entry
THAPSDRAFT_23187 CDS
T01078
Name
(RefSeq) hypothetical protein
KO
K14856
protein SDA1
Organism
tps
Thalassiosira pseudonana
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tps03009
]
THAPSDRAFT_23187
Ribosome biogenesis [BR:
tps03009
]
Eukaryotic type
Pre-60S particles
Other pre-60S particles
THAPSDRAFT_23187
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SDA1_HEAT
SDA1_dom
SDA1_C
Motif
Other DBs
NCBI-GeneID:
7442412
NCBI-ProteinID:
XP_002291141
JGI:
23187
UniProt:
B8C677
LinkDB
All DBs
Position
6:1301774..1305554
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AA seq
832 aa
AA seq
DB search
MSTKGATTGAGSRSTLPLKLSQLQNFCKRDPDGYKEDYDAQSRRLVSLVGILLLSPNADP
SPSLVELIQFMAAVSSSSYKGEDSDRVADLLMDLLVGSSNGANNSNGGFSSSPSNNLTPI
LNSTLPVAALQLHRDIRKACVSALILMRNKGAVPPLRLLQLFFQLMAVVPDKNLRESLYH
HIVNDIRNINKNGKRDEKLNRTIQSFFHRIVSASANESTPGGEDSPTDYAAKRAVQMTCD
LYRRNVWNDERSVHILATAASSPNASVLSRALRFFLNIEEAMSLDKKASEDQKWEGNSTV
NLHLHSKKTKARKREVEKQVKNRQKKQNERESHILAYREDRGVETSKKLFPAIELLNDPQ
GLAETLLKRVKSSGSNTYKFEVKMLMLNMVTRVVGNHELMLLPLYPLLQRYMGGHQRDVT
AILAYSVQSCHSYVPPEEIYGILKTIAHNFITERCSGEQMAVGINAVRAICARVPSVLSG
EDEEECTGEGDDKVAASATWDVEAFVRDLAGYAKHNDRSVSIAGRGWVNFIREVYPSLLQ
GKDRGLVGAGLHRAGEKPLKYGEVRAAAGVEGADLLAAYEASKKAVKENANESEEDGSEG
DESGEWVEVTNGDESEIEIDDEEEDEASDEDAPDLVLLGDKETINGDEGNDSKEMAKDLS
KLSPKERAKLQQEVSSTRIFTTAEFAKMQKLVERQQQARRDPRMAAKLKRAIAKGEEFAD
LSDDDSDIDSDDDDIHISGAVNPTDIMADAKRKRMSKKEKLQKVLEGREKWEAKGRAGGS
TNVEKKRKKNFAMSKFSFATRQKMGEKGTAKQGRKKKMIEGGRDSKKRRRKV
NT seq
2499 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccaagggagcaacgaccggagcaggctctcgctccactctccctctcaaactg
tctcaactccagaatttctgcaagcgtgaccccgacggctacaaagaagactacgatgcc
caatctcgtcggctggtttctttagtaggcatattgctactctccccaaatgcagatcca
agtcctagccttgtggagttgattcagttcatggcagctgttagttcaagcagttataag
ggagaggacagtgatcgtgtcgctgacttgttgatggacctgttggtcggtagtagcaat
ggtgcaaacaacagcaacggcggattcagttcaagtccttccaacaacttgacacccatt
ttgaacagtacacttccagttgcggcacttcaactccatcgtgatattcgcaaagcatgc
gtatcggctcttatacttatgcgtaacaagggtgctgtacctccactacgtcttctgcag
ctattcttccaactcatggctgtggtgcctgataagaacctccgtgaatctctctatcat
cacattgtcaatgatatccgaaacattaacaaaaacggcaagcgtgatgagaagttgaat
agaacaatccaatctttcttccatcgtattgtatcggcaagtgctaacgagtctacgccg
gggggagaggacagtcctactgactacgctgccaaacgtgccgttcaaatgacgtgtgat
ctctaccgtcgtaatgtatggaacgatgaacgatccgttcacattctcgccacggccgca
tcgagtcctaatgcatcagtgttatcacgagctcttcgtttctttctcaacattgaagaa
gcaatgtcactcgacaaaaaagcatccgaggatcaaaagtgggaaggaaattcgaccgtc
aacttgcatttgcactctaaaaagacaaaggcccggaagcgagaagtggagaaacaagtg
aagaataggcaaaagaagcagaatgagcgagagagtcatatcttggcgtacagggaggat
cggggagtggaaacatccaagaagttgtttccggcgattgagctgttgaatgatccgcag
gggttggccgagacgttgctgaagcgagtgaagagttcgggctccaacacgtacaagttt
gaagtgaagatgctcatgttaaacatggtcacgagggtggttggtaatcatgagttgatg
ttgctgccgctatatcctcttcttcagagatacatgggaggacaccaacgtgatgttact
gccattctggcatattctgttcaatcttgccactcttatgttccacccgaggagatttac
ggcatactaaaaacgattgctcataatttcattacggagaggtgttctggagagcaaatg
gctgtgggtatcaatgcagtgagagctatttgtgcacgtgttccttcggttttgtctggt
gaggatgaagaggaatgcacgggagagggagacgacaaagttgctgcgagtgccacttgg
gatgtggaggcctttgttcgtgatttggctggatacgccaagcacaatgataggtctgta
tctattgctggaagaggatgggtcaacttcattcgtgaagtatatccctctctcctccaa
ggaaaggatcgtggactggtgggcgctgggttacatagagctggagagaaaccattgaag
tatggtgaagtcagagctgctgctggagtggagggagctgatctattggctgcctacgag
gcatcaaagaaggccgtcaaagagaatgcaaatgaaagcgaagaagatggaagtgagggt
gacgagtctggtgaatgggttgaggtaaccaacggcgatgaaagtgagattgaaattgac
gatgaggaagaggatgaagctagcgatgaggacgctccagacttggtactgcttggagat
aaagaaaccatcaatggtgacgaaggtaatgatagcaaggagatggcaaaggatctatca
aagctatctcccaaagaacgtgccaaacttcaacaagaggtatcgtccactcgtattttc
accacagccgagtttgctaaaatgcagaagctcgtggaacgacaacagcaagcacgacgt
gatccacgtatggctgccaagttgaaacgtgcaattgccaagggagaagagtttgctgat
ttgagtgatgatgatagcgatattgactcagacgatgacgacattcacatctcaggagcc
gttaatccaacggacatcatggccgatgccaagaggaaaaggatgagtaagaaggaaaaa
ctacaaaaggttcttgagggccgtgaaaagtgggaggcaaaggggcgagctggtggttct
acgaatgttgaaaaaaagcgaaagaagaactttgccatgtccaaattctcgttcgcaaca
aggcagaaaatgggtgagaagggtacggccaagcagggtagaaagaagaagatgattgag
ggtggacgagactctaagaaacgccgtcgaaaggtgtaa
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