Thalassiosira pseudonana: THAPSDRAFT_24019
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Entry
THAPSDRAFT_24019 CDS
T01078
Name
(RefSeq) predicted protein
KO
K03509
DNA polymerase eta [EC:
2.7.7.7
]
Organism
tps
Thalassiosira pseudonana
Pathway
tps03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
THAPSDRAFT_24019
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tps03400
]
THAPSDRAFT_24019
Enzymes [BR:
tps01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
THAPSDRAFT_24019
DNA repair and recombination proteins [BR:
tps03400
]
Eukaryotic type
TLS (translesion DNA synthesis) factors
Y-family DNA polymerases
THAPSDRAFT_24019
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
IMS
SAC3_GANP
POLH-Rev1_HhH
IMS_C
DUF5305
Motif
Other DBs
NCBI-GeneID:
7453067
NCBI-ProteinID:
XP_002292494
JGI:
24019
UniProt:
B8C8E2
LinkDB
All DBs
Position
9:complement(757643..763120)
Genome browser
AA seq
1538 aa
AA seq
DB search
MAGAANDNTISSNNPHGRVILLLDMDCFYAQCEVVRLGLERDIPLVLVQWNSALAVNYPA
RKFGIKRGDSFQVAIEKSRGKCVAIHLPVTPVASVSLSPVREGKKSPVKSNVTPVKSDVS
SAKVDIKSDSNKDCGEGIGGANPNEASSVQRAQIKSPPRDTNNANYYEEEDDELQSSEAS
YEAEFNQPQHVKDEMYKREKNTMRSPTEGKACLDRYRLASSRIFSLIEETLIEKLGKKNF
ILERASIDELFIDVTAFCYSANVHKNESESKDDDNDNSKEEVQSVETQFRLQCQEEAVQS
LSDTVICHESHIGSTDKDDEIGRALRLGCHVSANVRRVVFQKLGFTLSAGISTSKLVAKL
GATYGKPNGQAVIYPVAIPKVMDETQIRKARMLGGKLGKKVGSMNIDADDVIRSYIDKSI
SFAVGDESGRWVFDACRGICLEEVKPTLNVLPKSITAFKSLRGSAGSYPELDKWVALLAS
DIMKRVQLDTSRNHRVPKSCTLGYATKEDGNNWIGKSHRLTFPTDKDFDTRVQKLVDNAR
RVLLDSGHDSFSRIGFSAIDFVTRATKGIYSFFSVGKIESSSARREKSTTVVVKKKCNPK
QPAGIGAFFSVGKDNLSPMPAQKEDDSESIDVEEQTTKETHGIAQLTCPEPVTNDPTTVT
ETNVPQEIDEDEEFARKLQLELNGDIDSSTPNALPTDKDEALAQQLQSTYDREHSVLSGV
ERFSGTTIPKRKRDGNAKSSQKQKKQSQGENKSFFELRSLLLFPLFLAAHRPIVFVVPHE
PRTISIMASSLMARLQQTSSASAIPTSASVVGVSLSTSSHAPSKPITIKAGHSPKPVEQL
IRNLPHPTPVIPPPFFMCSESEAEDRHHHLELSPFEYHYVSLGRQSSCISTTSSGGNGAA
NKSLQTPQRRGVKDANEISLDSPTPKKPSSLAAALSSPPSRSSSYYSKHGSNSNENNEIA
GKSSYVPPFKRVADTTIIVHTEQPKPTQATIVTSPTAPTIASTQKAARNRPNFHPQYVVK
KYRRSAAGGGTLSEISEKSIRSLEQLKVTVEYLLLQILVWQRPPGENDCGDGRGGRGNLD
QNEVSIWDEDTPIKQPNTQQSQQQPRFSLSDTVAFIDDRLRAVQKDLVTLLGNFEVSFDI
SVNANAALETQQQHNQQQSSLQHEIKPMLRQMQARMVRYSILALYLLSNVPPSKYEVKFG
ARALRTSLTCYLNLSLTLHEEHGQHDDTYDDECRVKDEMMAYMALLHSSAVLRSEESALP
PSGGSEITSSLMEESGSGWGALLSTFTKHVLLEKSMEGINSGQSLVEKYPRWKWTLELAS
MVQDGNYQRYFNLLERGPSLSTNQQYAVSEDNARFLILARCCCSHSLNLIRLSALRRYNH
TFGKGEQVSGTDIARLLRWESDDEAESSQLAISFCRDAGLPIIESDGENYVKVVMKSVPL
SIEGDEAIGRMCNPGRSNDMFVFGTQFETPDTNEHGSDVTTLMNQIEKLDIEENVEVWED
RDASVDDASSAATFSIEARVDEDGVVIPASNVIWSLIQ
NT seq
4617 nt
NT seq
+upstream
nt +downstream
nt
atggccggagctgcaaatgacaacactatatcgtccaacaatccacacggacgagtgata
ctgctgttggatatggattgcttttatgctcagtgtgaagtggttcgtttggggttagaa
agagatattccattggtgttggttcagtggaactcagccctggcagtaaactatccagca
cgaaagtttggtatcaaacgaggagactcattccaagtagccattgaaaaatcacgtggg
aagtgtgttgcaattcatttaccagtgactccggtcgcgagtgtttcgctgtcacctgtc
agagaaggaaagaagtctccggtgaagtccaatgtcacgcctgtcaaaagtgatgtatct
tccgcgaaagtggacatcaaatctgacagcaacaaagactgcggggagggaattggaggt
gcaaatccaaacgaagcttcgtccgtgcaaagagcacaaatcaagtccccgccaagagat
acaaacaacgcaaactactatgaagaagaggacgatgaattacaatcatcagaagcatca
tacgaagcagagttcaatcaaccacaacatgtcaaagatgaaatgtacaaacgagagaag
aatacaatgcgatctccgacagaggggaaggcttgcttggacagataccgattggcttcg
tctcgtatattttcactgattgaggagactctgatagagaaactcggcaagaagaacttt
atcttggagagagcttccattgatgagcttttcatagatgtcactgcgttctgttactcc
gcaaatgtacacaaaaatgaatccgaaagcaaagatgacgacaatgacaactcaaaagaa
gaagtacaatctgtagaaacacaatttcgtctgcaatgccaagaggaagcagttcaatca
ttaagtgatactgtgatttgtcatgaatcacatataggatccacagataaggatgacgaa
atcggaagagccctccgtttgggatgtcatgtctcagcaaatgtgcgtcgtgtagtattt
cagaagttgggttttacattgtcggctggcatatcgacgagcaagttagtggcaaagctg
ggtgcaacgtacgggaagccgaatggacaggccgtaatatatcccgttgctattccgaag
gtcatggatgaaacgcagatccgaaaggcacgcatgttgggcggaaagttagggaagaag
gtaggttcgatgaatattgatgctgatgatgtcatccgttcatacattgataagtccatc
tcctttgcagttggtgacgagtcaggccgttgggtgtttgatgcctgccgaggaatatgc
cttgaagaggtgaagccaacgctcaacgttctcccaaaatccatcactgcattcaaatcc
ctgcgaggatcagcaggttcgtacccagaattagacaaatgggtagcattacttgcttct
gatatcatgaaacgagtgcagctcgatacttcacgaaaccacagagtaccgaaatcttgt
acgcttggctatgcaacaaaagaagacggcaacaactggatcggaaagtcacatcgtctc
accttccctactgataaagactttgatacacgagtacaaaagctagttgacaatgcacgc
agagttctgcttgatagtggtcatgattccttcagcagaatcggcttcagtgctatagat
tttgtcactcgagctacgaaaggcatatactccttcttttcagttggaaagattgaatct
tcttcggcaagacgcgaaaagagtacgactgtcgtggtgaaaaagaagtgtaatccaaag
caaccggctggaattggtgctttcttctctgtaggcaaagataatctgtccccaatgcca
gcacaaaaagaagatgactcggaaagtatcgatgttgaggagcaaacaaccaaagagact
cacgggatcgcacagttgacttgtcctgaaccagtgacgaatgaccctacaacagtaaca
gaaaccaatgtccctcaagaaattgacgaggatgaggaatttgctcgaaaactccagctt
gaactgaacggagacattgactcttccactccaaatgcattaccaactgacaaagacgaa
gcattagctcaacaactccaatcaacatacgatagagaacactctgttctctctggcgta
gaacgtttctctggaacaacgattccaaagaggaagcgtgacggtaatgccaaatcatct
cagaaacaaaagaaacaaagccaaggagaaaataagagtttctttgagttacgaagttta
cttttatttcccctgtttcttgccgcccaccgtcctattgtcttcgtcgttcctcatgag
ccaaggacgatcagcatcatggcgtcctctctaatggctcgcttacagcaaacctcctct
gcgtcggcgatacctacctctgcatcggtggtcggtgtctcgctgtccacatcatcacat
gcaccgtccaagcctatcaccataaaggctggacactctcccaaaccagtggagcaactg
atacgcaacctgccgcatcccactccagtcatcccgcctccgttcttcatgtgttctgag
tctgaagcggaggatcggcatcatcatcttgagctgtcgccgtttgagtatcattatgtc
tctttgggtcggcagagtagctgtatctccacaacgtcttcaggtggtaatggtgcagcc
aataagtctctacaaactccacaacgaagaggagtgaaagatgcaaacgaaatatcgttg
gatagtccaactcccaagaagccatcttcgttagcggctgctttgtcttctcctccttcg
aggtcttcgtcgtactactccaaacacggaagcaacagcaacgagaacaatgaaattgca
gggaagtcatcgtacgtgcctccattcaaacgagttgccgatacaacaattattgttcat
acagaacaacctaaaccaactcaagcaacaatcgttacatctccaactgctccaacaata
gcatcaacacaaaaagcagcacgcaatcgtccaaattttcatcctcaatacgtcgtcaaa
aagtacagaagatctgcagcgggagggggaacacttagtgaaatatccgaaaagtcaatc
agatcattagaacagttgaaagttactgtggagtacttgttgttacaaatcttggtttgg
cagaggcctcctggagagaatgattgtggggatggacggggagggagaggcaatttggat
cagaatgaggtttcaatatgggacgaggatactccgataaagcaaccaaatacgcagcaa
tctcaacagcaaccccgattctcgttaagcgatacagtagcattcattgatgatcgtcta
cgtgctgttcaaaaggatttggtcactctcctcggtaactttgaagtgtctttcgatatc
tccgtcaatgcaaatgcagctttggaaacacaacagcaacacaatcagcaacagtcttca
cttcaacatgagatcaaaccgatgttaagacagatgcaggcgagaatggtccgatatagc
attcttgcgttatatctactgtccaatgttcccccgtccaagtatgaagtcaaatttggt
gcacgagctttgcgaacatcattaacttgctatttgaacctttcgttgacgttgcacgaa
gagcatggacaacatgatgatacctatgatgatgagtgtcgagtcaaggatgaaatgatg
gcttacatggcattactgcattcttcggcagtgttacgatcggaggagagtgcgcttccg
ccatcgggaggaagtgaaatcacgtcttcgttaatggaagagagcgggagtgggtgggga
gcactactatctacctttactaagcacgtattgctagaaaagagtatggaaggcattaac
agcggacaatcgttggtggagaagtacccgcgatggaaatggacacttgaattggcaagt
atggtgcaagatggaaactaccagcgatactttaacttgttggagagaggtccatcgttg
tcgacaaatcaacaatatgcagtctcggaagacaatgctcgtttcttaatcttggcacgg
tgctgttgttcgcattcgttgaacttgatacggttgtcagcactacggcgatacaatcat
actttcggaaagggagaacaggtttcagggactgatattgcgcgattgttgcgatgggaa
agcgatgatgaagcagagagctcccaactcgcaatttccttttgtcgtgatgcaggtctt
cccatcatcgagagtgacggagagaactacgtgaaagtagtgatgaagtcggtacctcta
tcgattgagggagatgaagctatcggaagaatgtgcaaccccggcagaagcaatgatatg
tttgtttttggaactcagtttgagacaccagatacaaacgaacatggcagtgatgtcaca
actttgatgaatcaaatagagaagttggacatcgaagagaacgtagaagtttgggaagac
cgtgatgcttccgttgatgatgcctcgtctgcggctacgttttctattgaagcgagagtg
gacgaggatggagttgtgataccagcgagcaatgtgatttggagcttgatacaatga
DBGET
integrated database retrieval system
