Thalassiosira pseudonana: THAPSDRAFT_24080
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Entry
THAPSDRAFT_24080 CDS
T01078
Symbol
Lhcr1
Name
(RefSeq) fucoxanthin chl a/c light-harvesting protein, lhcr type
KO
K08910
light-harvesting complex I chlorophyll a/b binding protein 4
Organism
tps
Thalassiosira pseudonana
Pathway
tps01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
00194 Photosynthesis proteins [BR:
tps00194
]
THAPSDRAFT_24080 (Lhcr1)
Photosynthesis proteins [BR:
tps00194
]
Antenna proteins
Light-harvesting chlorophyll-protein complex (LHC) - Plant, Green alga [OT]
LHCI
THAPSDRAFT_24080 (Lhcr1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Chloroa_b-bind
DUF2125
FAM101
YjbE
Motif
Other DBs
NCBI-GeneID:
7451002
NCBI-ProteinID:
XP_002292353
JGI:
24080
UniProt:
B8C8Q0
Structure
PDB
PDBj
LinkDB
All DBs
Position
9:1104649..1106341
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AA seq
204 aa
AA seq
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MMKIAALLALAGSSAAFAPVNNGKAATALNAEMSKAMPFLINPANTDGLIGSNGFDPLGF
SDTFDIKWLQESEIKHGRVAMLASAGFIASQFVNFPMYSSMHVDDSNMAPTVVGISAMLQ
IVCAAGVEEWRTYKGQVTMEDMFTGDMADRTPGDFGFDPMGQLKGKSEAAVNEMKLKEIK
NGRLAMLAIGGMIHHNFVTGEALF
NT seq
615 nt
NT seq
+upstream
nt +downstream
nt
atgatgaaaattgctgccctccttgcacttgccggctcttctgccgcatttgctcctgtg
aacaatggcaaggctgccaccgccctcaacgccgagatgtccaaagccatgcccttccta
atcaaccccgccaacaccgacggactcatcggttccaacggattcgaccccctcggcttc
tccgacaccttcgacatcaagtggctccaagagtccgaaatcaagcacggacgcgttgcc
atgctcgcctcggccggtttcatcgctagtcaatttgtcaacttccccatgtactcgagc
atgcacgtggatgactcgaacatggctcctaccgttgttggaattagtgccatgcttcag
attgtctgtgcggcaggtgttgaggagtggcgtacgtacaagggacaggttaccatggag
gatatgttcactggtgatatggccgaccgtacgcctggtgactttggatttgatcccatg
ggtcagctaaagggaaagagtgaggctgctgttaacgaaatgaagttgaaggagatcaag
aacggaaggttggctatgcttgctattggcggtatgatccaccacaactttgtcactgga
gaggctctcttctaa
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