Thalassiosira pseudonana: THAPSDRAFT_24171 Help Entry THAPSDRAFT_24171  CDS       T01078                                  Name (RefSeq) predicted protein   KO K20183   Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39 Organism tps  Thalassiosira pseudonana Pathway tps04142   Lysosome biogenesis tps04148   Efferocytosis Brite KEGG Orthology (KO) [BR:tps00001]  09140 Cellular Processes   09141 Transport and catabolism    04142 Lysosome biogenesis     THAPSDRAFT_24171    04148 Efferocytosis     THAPSDRAFT_24171  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:tps04131]     THAPSDRAFT_24171 Membrane trafficking [BR:tps04131]  Endosome - Lysosome transport   Tethering complex    Hops complex     THAPSDRAFT_24171 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  COP-gamma_platf TPR_Vps41 Motif Other DBs NCBI-GeneID:  7451104 NCBI-ProteinID:  XP_002292835 JGI:  24171 UniProt:  B8C9D8 LinkDB All DBs Position 10:complement(495169..>499618) Genome browser AA seq 1461 aa AA seqDB search MSATLGPSWNLRSNSSPRCLIAYIANTKTSEPNGGGGGDASNPFDDELRPSWSVDGAHGV ASRSSGSSVFAFSVAFGTERGSLHYREYPSGGDAYDDVGVSSGGGVGRRMASHERSRDTS QLCIDPETPINLQGAVKGSIVGIVCARTSSPNDTTGTSATGAGENEHNETSPVFLLLVDD NRGSSSAQSSNPGAFAAHLVTMKHGTFGKLPAAPASATFGASGILSTGGESGHWQVDGGG GTDRPPPSHKRGGSKSGSGGMSGWFGSESGGADKSTSQMMGAQLSTSNPATAASLGTLPR MSCATYHPNTGYVYAAGTGIHGLAPTAVKAVLAGMMLHETHPSGGRGKHVPFHHLSNTSV SSSSQAIRQRQGHKTTHSTPQPPVAVYLKCNNALPQPGVRCSSGGGSKNAMTLACSGRVA IVAVTNAFYAVQSCLDLNAIRSYCMEESYSGVSMGGAVPSSLPNVVATKLMAFAQSSQVH PVIAMEVMASTDRSSTGTSGINDVSLDMARWLKQVTSLVVLASGRACTAVEVTSIPDACA VSMLGKGGSVSVSGIVSTSIKSTAPRHGIATFPSPILAAAPLPPIARGIRGDSVGKGGNG GDLTSGPLIALLTVDGLVHIRSPFCIAVALTSIEVGTRPNDFFSLSSLASLRNDGLRQIV ATSYGGESRLISCHEENSQEFADRLIKMSIDAFGVNGFPRLELADALGATFSATSYVGPE PTTLKRSLIREYLESMLGLSDDIRLFMGKNGNVLAVSDDGLDLVNSTPEGSALESNALLT CTALLCLVCFQLSPPNATLASRGSKACASQMGIVRPKDSSISKAAIAVCELIADRLLKEA SASFSLLNASSPAPISSVISKNGASMEFVESAVWLLRSCGCHEKAILVLSERMNNPALRN ASIVSSGIPSASSGGSGWPQIKYDSYFATHLGELWSSRDDACCQLVLSSSATRDLIARNP TLGLSIFTTPHPQNTKEWRKVKPGDDPLSHPVYPSKVVELLKSVTTTVGKYEFSNIGERS PLESLGANSVGQSDSGPLPLQSCRALAVTYLESAIGIATGRPSQSGETSFHPECQSDSDE RKADMHDELSYLLLEGVISERGDGDDGEDSDLGAIYRYKLRRLLSWPNSMIRSERLLASL PSSFLREHALLLGRMGRHEDALRIFYSDLSSLELALEYCDVRHEMEPKNLPRECSYLPLV KVALNSDPDSDRGIAAAIQVLALRRDAIDKSAALRLLPKDVPMSAVARPFLIPAVVENES QVRRLTVAASLLRSRYVQLKQKLTEAQLKSNASLHSPALQKLNLGEPLRSSKPFKARPVH AHSSGPNFPDVMLVKHFFPRHLVIQAKVMNTASNANTRTLSDVAFVVAESSDEAILPTME VPLKTLPCNAVGSAWCVMAASPQRLDGTVFLTCELRYTVLSMDATTGAPLNFNEGASNSG FGRTYVEELQDIEIRHTDFSS NT seq 4386 nt NT seq  +upstreamnt  +downstreamnt atgagcgccaccctcggtccatcctggaacctacgcagcaattcctccccacgctgcctc atagcatacatcgcaaataccaaaactagcgaacctaacggcggtggcggtggagatgca agcaatccatttgacgatgaacttcgcccatcatggtcggtcgatggtgctcatggtgtt gcatcccgatcttctggaagtagtgtgtttgctttctccgtagcatttggtacggagcgt ggatcgttgcattatcgtgaatatccatctggtggggatgcatacgatgatgtaggcgtg tcatctggtgggggagtaggtagacggatggcatcacatgaacggtcacgtgatacaagt caattgtgtattgatccagagacacccattaacttgcagggtgcggtaaagggctccatt gttggaatagtttgtgctcgaacatcctcgccaaatgacactactggaacgagtgcaact ggagcaggagagaacgaacacaacgagacttcgccggtatttttactattagtggatgac aatcgaggctcgtcctctgcacaatcttccaatcctggtgcttttgcagctcatttggta acaatgaaacacggtacatttgggaagttgccggcagctccagcaagcgccacttttgga gcttctgggattttgtcaacggggggagagtctggacattggcaagtggatggaggtgga ggtacggataggccaccgccctcccacaaaaggggagggagtaagagtggtagtggtgga atgagtgggtggtttgggtcagagagtgggggtgctgacaagtcaacatcacaaatgatg ggggctcaattgtcaacaagtaaccctgcaacggcagcctctttgggaacgctcccccgt atgtcctgtgccacctatcatccaaacactggatatgtttatgcagctgggactgggatc cacggactcgctccaacggctgttaaggcggtacttgccggtatgatgttgcacgagacg catccttctggaggacgaggcaaacacgttccgtttcaccacttgtccaatacatcagtt tcttcttcttcacaagccattcgtcagaggcagggacacaaaacaactcattccacacca cagccgcccgtagcagtatatctgaaatgcaacaacgcccttccgcaaccgggagtgcgt tgctcttcgggaggaggatcaaaaaacgcaatgactctcgcatgttcaggacgagtggca attgtggccgtcacaaatgctttctatgcagtgcaatcttgtttagatctaaacgctatt cgcagctactgcatggaggaaagttacagtggtgtcagtatgggcggagctgtgccgtca tcattgccaaatgtcgttgctacaaagttgatggcctttgctcaaagttctcaggtacat ccagtgattgcaatggaagttatggcgtcaacagatcgctcttcaactggcacaagtggt atcaatgatgtttccttagacatggcgaggtggctgaagcaagtcacaagtcttgtggta cttgctagcgggagagcctgcacggctgttgaagtcacgtctattccagatgcatgtgca gtttcaatgcttggaaaaggaggaagcgttagcgttagcggcattgtctctacttccatc aaatctacggcacctcggcatgggattgcgacgttcccaagtccaatccttgcagcagca cctttgcctcctatcgcaagagggattcggggagacagcgtgggcaaggggggaaatggc ggtgatcttacgtctggacctctgatcgcactccttactgtggatggtttggttcatatt aggtctccgttttgtattgcagtcgcattgacatctattgaggttgggacgcgccccaac gatttcttttcgttgtcctcattagcaagtctgaggaacgacgggcttagacagatcgtt gcaacgagttacggtggagagtctagattgatatcgtgtcatgaggagaattcgcaggag tttgcagaccgtctgatcaaaatgtccatcgacgcatttggggtaaacggatttcctcgc ctcgaactcgcagatgctttgggagcaacgttctctgctacttcctacgttgggcctgaa ccaaccacgttgaaacgatcattgatacgagaatacctagagtctatgctgggattatct gatgacattcgcttgtttatgggcaagaatggcaatgtattggcggtttcagacgacgga cttgatcttgttaattcaacaccagagggaagtgcacttgagtcaaacgcactcctgacg tgtaccgcacttctttgcttagtgtgcttccagttaagcccacccaacgccactcttgcc agtcgtggatcaaaagcttgtgcaagtcaaatggggattgtgagaccgaaagattccagc atttccaaggcagctattgccgtttgtgagttgatagcagatcgtctgctgaaagaggct tccgcgtctttttctctcttaaatgcgtcatcgccagcacctatttcttcggtcatatca aagaatggtgcgagcatggagtttgtagagtctgcggtttggttattgcgatcgtgtgga tgtcatgaaaaggcaattctcgttttatcggaacgaatgaacaaccctgctctgagaaat gcgtctattgtcagcagtggtatcccatcagcgtcatctggaggatctggctggcctcag ataaagtacgacagctactttgcaactcacctcggagaattgtggtcgagccgcgatgat gcatgctgtcagctggtgctatcatcttcggctacgcgtgatctcattgcacgaaatcca actcttgggcttagtatcttcacaaccccacatcctcaaaacacaaaggagtggcgaaag gtgaaaccaggcgacgacccactgagtcatcctgtctacccatccaaagttgtagagtta ttgaagtccgtgactacaacggtcggcaagtatgagttcagtaacattggagaacgctct ccgttggaatccctaggagcgaactctgtaggtcaatcagactctggcccattgcctcta cagtcttgcagggcattagcagtgacttacttggagtctgcaattggaattgcaactgga cgtccatctcagagtggagagacgtctttccatcctgaatgccagagtgatagtgatgaa cgaaaagcggatatgcatgatgagttgtcgtaccttcttcttgaaggtgtcatatcagaa cgtggcgatggagacgatggtgaagactctgatcttggtgcaatctacagatacaaactc agaagacttctcagttggccaaattcaatgataagatccgagagactcttagcttcgtta ccatcttcgtttctacgagagcatgcgttgttgctggggcgaatgggtcggcacgaggat gcccttcggatcttctattcggatctgagtagcttagagttggcattggagtactgtgat gttcgtcatgaaatggagccgaagaatcttcctcgtgaatgcagctacctcccacttgtg aaggtggctctaaattcagatccagattctgacaggggcatcgctgcagctatccaagta ttggctcttcgtcgcgatgccattgataagagtgcagccttacgtcttctccccaaggac gttccaatgtcagcagttgctcgtcctttcttgattcctgctgttgtggagaatgaatcg caagtaagacgactcacagtagcagcatcgttgcttcgatcaagatacgttcaattgaaa caaaagcttacagaggcacagctcaagtcaaatgcatctcttcatagccctgctctacaa aagttgaacttgggcgaaccacttcgttcatcaaagcctttcaaagctcgtccagtccat gcgcattcatcgggtccaaactttccagacgtcatgttggtgaagcatttctttccgagg cacttggtaattcaggcaaaggttatgaatactgcatccaatgcgaatacacgaacattg tcagatgtggcattcgttgtagccgaatcatcggacgaagcaatattgccgacgatggag gtacctctcaagacattgccctgtaatgctgttgggagtgcttggtgtgtcatggcagca tccccacaacgtttagatggtactgtattcctcacatgtgaactgcgctacaccgtactg tcaatggatgctacaactggagcacctctcaactttaacgaaggagcgagtaactctggc tttggaaggacatacgtggaagaactgcaggatatcgagatacgtcacactgattttagc tcttga

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