Thalassiosira pseudonana: THAPSDRAFT_24183
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Entry
THAPSDRAFT_24183 CDS
T01078
Name
(RefSeq) predicted protein
KO
K20179
vacuolar protein sorting-associated protein 11
Organism
tps
Thalassiosira pseudonana
Pathway
tps04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
THAPSDRAFT_24183
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tps04131
]
THAPSDRAFT_24183
Membrane trafficking [BR:
tps04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
THAPSDRAFT_24183
Hops complex
THAPSDRAFT_24183
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_PEP5_VPS11
PEP5_VPS11_N
DUF2125
Motif
Other DBs
NCBI-GeneID:
7445898
NCBI-ProteinID:
XP_002292657
JGI:
24183
UniProt:
B8C9G6
LinkDB
All DBs
Position
10:570390..574614
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AA seq
1332 aa
AA seq
DB search
MTSSRWKRFTFFDRKNLPLPPPLVKDLIPTVGGTLTASTRGARGDVVNQSSSSLDPASLY
PEETNHEDCIKIGHGEYFSLVAATNVSLPSSLSSEVDGAVGASTSGDDLRVAMKRGAAGD
GAPAMQAGRLAVHSRSAVNTSSHHEGTIQAVGSKGGTTIGGEEGGNGELQLLFASSRNTS
LVHCVDITVRCTPDNPHLVQNSVSDTASSVGGDGKNAFASGSSLGASSALANPEELDGWR
GHYDPFQCANGFLSGKKETSVTASSATKPAPTTSSKGSSKRVSAEQRILDEHLGGGSNYE
TASGSLFGSSPFANELLEPSAPLKKARIVGLATASSAGDSSNDSILYVASVTDTLETVGV
VVHSNPHLMLSMLPPSSATGVSTSNEYSSYYKPSEGFNFTTNGRPRCVSVLPGVVCVGTD
TGVVLIYAFDCKSSKGKMALVAEIPAPRGVVEKSEGNTLPMYAVSSVELIGPRTSGEKES
IAQKSLSPNSDIHRLFVAYRRRVQTDGSGATPGSGPSGGVCCFDLGGLRIPGKPLQVGLS
ANAPVVSARFDMDGRDVGSSCLCDKVSLPPMPPSWIKSEAAKIEGDRQLDLKEKEDTAAS
STMEKMLPRYVVARGDGLHLYSPSEKVGVCPVDGNKTALCSLPPPPVAYLSRPLKPLVGS
SSLDGSAGRNDASLGAGASYALVATTDSKSGRDVVDIYDTTNKLVGFHVLLSPGHRALRT
LGIASSPTVGGGTLIRGGRSTAVILTSGGSVVTFTEKVTPDKVSLLVQKSLYAAAISMAF
SDPSFYRPEDITALYRRYAEHLYRKGDFAAAMDQYIFTIGSLESSHVIFRFLDAPKIPLL
VKYLEALRTQRLQSTVHDELLRTCYLKLNDHESAGKIILSSPNAGDGGVVPLNPDGSEVS
TVSISRNLLACADDPSEMLAAICSLEAPEAAQALVSHGPMLARSLARETAGVVIALCDGT
YSPTALADAAAGRSASQQNRDDGLMCEKYPICLFANSFMENPKLFRLILSHCRRNECILT
PTLRRTLLELTLDEWNAAKRVGDGELEKLRHDEAITMLSENHADDMGDYEALVIVQAVGF
YDGETLLYERLNMVPMLLDQYARSGSERSRRQMLAMCEHDPELFSEVLAHFVRMAGDKLK
DFPREDLSVDSESEVGGLLHDIHEALLLARELGLPPVRVLRILGGEGHGQFSTDNTTHIH
AVNRGSVPLSVAMDYVGATLDDSTQKIKRLKNNVEEYCRMCNDMELEINALLSSGLSKKT
EGMRKTALPNVDIDEMYSDLCELADTSITSADAGNIFGRNDSREEFWREMEHSDDPFETL
CFYISKGYLEGV
NT seq
3999 nt
NT seq
+upstream
nt +downstream
nt
atgacaagctcacgatggaagcgattcaccttctttgatcgcaagaacctccctctacca
ccaccattagtcaaggatttgatccccaccgtcggcggcacattaacagcatccacaaga
ggtgcacgaggagatgtcgtaaaccagtcgtcatcgtcgttggaccccgcctccctctac
cccgaagagacgaaccacgaggactgcataaagattggtcatggggaatacttcagtttg
gttgcggctacaaatgtatcactcccatcgtcgttgtcgtctgaagtagatggtgctgta
ggcgcgagcacaagtggtgatgatttgagagtggccatgaaacgaggtgccgctggagat
ggagcgccggctatgcaggctggccgtttagctgtgcactctcggtcagctgttaacacg
tcttcccatcatgaggggacgatacaagcagtgggaagtaagggcggcacgacaataggc
ggggaagaaggtgggaacggggaactgcaattgctatttgcatcttcacgaaacacatcc
ttggtacactgtgttgatattaccgtgagatgcacacccgacaatcctcatttggttcaa
aactctgtcagcgatactgcgagtagtgttggaggtgatggaaagaatgcatttgcttca
ggcagtagccttggtgcttcctcggcgttggcgaaccccgaagagcttgatgggtggagg
ggacattatgatcctttccaatgcgctaacggatttttgtccgggaagaaagagactagt
gtcacagcatcctctgcaaccaaaccagcaccgacaacatcttcaaagggtagttcgaag
agagtgtctgcagaacaacgaatattggacgagcacctagggggaggatcaaactacgag
actgcttctggttcgctgtttggatcctcgccatttgcaaatgagctattggagccgtct
gctcctttaaagaaggcgaggattgtaggtttggcaactgcttcgtctgctggagattcg
tccaacgactccatcttgtacgttgcatcagtcaccgatacactcgagacggtgggagtt
gtggtacactccaatcctcatcttatgttatcaatgctacccccgtcatctgccaccgga
gtttctacgtcgaatgagtattcttcctactacaaaccatcggagggattcaattttaca
accaatggtagacctcgatgtgtttcagttctccctggagtagtttgcgtgggcacggat
acgggagttgtgctcatctatgcatttgattgtaagtcaagcaaagggaagatggcgttg
gtcgctgagattcctgcgccaaggggggttgttgagaagtcagaaggaaatacgttgcca
atgtatgcagtgagcagcgttgagttgattggacctcgaaccagtggtgagaaggagagc
atcgctcagaaatcgttaagcccaaacagcgatatccatcgtctctttgtcgcataccga
agacgtgttcaaacagacggatcgggagcgacacctggaagcggaccatcgggaggagtc
tgttgctttgatctcggtggattgcgtatccctggaaagcctcttcaggttggtctctct
gccaatgcaccagttgtgtctgcccgatttgatatggatgggagagatgtaggatcatca
tgtctttgtgataaggtatctttgccaccaatgccaccgtcatggataaagagcgaagct
gcaaaaattgaaggtgacagacagttggatctgaaagaaaaagaagacactgcagcatct
agtaccatggaaaagatgcttcctcggtatgtagtagctcgtggcgatgggttgcatcta
tactctccttctgaaaaggttggagtgtgccccgtggatggaaacaaaactgcattgtgc
tctctcccacctcctcctgtggcgtacttgagtagaccattgaagccattggtcggttcc
agtagtttggatggcagtgcaggaagaaatgatgcctctctcggtgcaggagcgtcatat
gcgttggttgctaccacggattcaaagtcaggccgcgacgttgtggacatttacgacaca
actaacaaactcgttggattccacgtgcttctgtctccgggtcatcgtgctttgcgaact
ttgggcattgcgtcgtctccaaccgttggggggggaactcttattcgtgggggcagatcc
acagcagtaattctcaccagtggtggttctgttgtgacattcacggagaaggtcactccc
gacaaggtatcgctgctagtacagaagtctctgtacgctgctgccatctcaatggcgttc
tcagatccatcattttatcgcccagaagatatcactgctctgtatcgtcgttatgcagag
cacttgtatcgtaaaggagactttgcagctgcaatggatcagtatatctttactattgga
agtctggagtcgtctcatgttatctttcgttttctggatgcaccaaagataccgttgctt
gtcaagtatcttgaagcccttcgaacacaaagactccaatctactgtccatgacgagttg
ttacgaacatgctacctcaaattgaatgaccatgaatcggcggggaagatcattctatcg
tcaccaaacgctggcgatggcggtgttgtgcctctcaatccagatggctcagaagtttct
acggtatcaatatctcgcaatttacttgcatgtgcagacgatccatctgaaatgttggca
gcaatttgctctttggaagcacccgaggctgctcaggcgcttgtgtctcatgggccaatg
cttgcgaggtcgctagcaagagaaactgccggcgttgtgattgcattatgcgatgggacg
tattcacccaccgcgttggcggacgcagctgctggaagatcagcgtcgcagcaaaaccgg
gatgatggattgatgtgtgaaaagtatccaatctgtctcttcgcaaactcattcatggag
aatccaaagctattccgtttgattttgtcgcactgccgtaggaatgaatgtatcttgaca
ccaactctcaggagaacgttgttagagcttactttagatgaatggaatgcagcaaaaaga
gtaggcgatggggagctggagaagttgcgtcacgatgaggcaataacaatgttatccgag
aatcacgctgatgacatgggagactacgaggctcttgttattgtacaagctgtagggttc
tacgatggtgaaacacttttatatgaacggctgaacatggtgccaatgcttttggatcag
tatgcgagaagtggaagtgagcgttctcgacgacagatgcttgccatgtgcgaacacgat
ccagagctcttttcagaggtgcttgcccactttgttcgcatggctggagataagttgaag
gattttccaagagaagatttgagtgtagattccgagtcagaagtcggagggttacttcat
gatattcacgaagcattgctcctagcacgagagcttggtctgcctccggtgagagtgctg
agaattctaggaggagaagggcatgggcaattcagtacagataacactacccacatccac
gcagtcaaccgtggcagcgtacctctttcagttgcaatggactacgttggtgcaacgttg
gacgattcgactcagaaaatcaaaaggttgaagaacaacgtggaagaatactgccggatg
tgtaacgatatggaactggaaataaatgctttactctcgtcgggcttgtcaaagaagact
gaaggcatgagaaagactgcgctacccaacgttgatattgatgaaatgtattccgatctc
tgcgagttagccgacacgagtattacctccgccgatgctggaaatatatttggaagaaat
gattctagagaagagttttggagagagatggagcactcggacgatccctttgagacactg
tgtttttatatatccaaaggatacctcgaaggtgtatga
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