Thalassiosira pseudonana: THAPSDRAFT_24323
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Entry
THAPSDRAFT_24323 CDS
T01078
Name
(RefSeq) predicted protein
KO
K12586
exosome complex component RRP43
Organism
tps
Thalassiosira pseudonana
Pathway
tps03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
THAPSDRAFT_24323
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tps03019
]
THAPSDRAFT_24323
Messenger RNA biogenesis [BR:
tps03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
THAPSDRAFT_24323
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
7443290
NCBI-ProteinID:
XP_002296551
JGI:
24323
UniProt:
B8LBV1
LinkDB
All DBs
Position
11
Genome browser
AA seq
374 aa
AA seq
DB search
MASVKAKAAPKDGQDGEHKASNSSSLEWILDAYRSLEPRNYINEFTSQNVRPDGRPFHTS
RPVTVLTSFLNRNSSGSAMVTLGGDDGSDNSSSTRVIAACTLLVGHPGPSTPTHGDIDVL
VTASPLSGPRFDCMGRESMDAANAFYNYNSVSGEKDDGVVQLNPETPSSSPQPTDTKDIE
SWIRRTLRSSRFIDPTELGIEPGKLAWRIRISIQIINHDGNVADAALLCACAALGDLKLP
MVEVDRREGGVVRIVKEDEAQVMNGGRNKDVEMRKGRSLTLGPLPVPLTIAILPNIKSKT
SASESSILLVDPTRLEEDVSSGNTITMVCNANEEIVEFHKRGSESRLSMDQIAAVACMGF
GRAKELEALVVGER
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
atggcatcagtcaaagccaaagcagcaccgaaagacggacaagatggagagcacaaagcc
agtaactcaagcagtctagagtggatccttgacgcgtatcgctcgctggagcctcgtaac
tacattaatgaattcacatcccaaaacgtccgtcccgacggcaggccattccacacctct
cgtcccgtcacggtcctcacctccttcctcaaccgtaattcatctggctctgcaatggtc
accctaggtggagatgatggtagcgacaatagctcatccacacgtgtgattgcagcatgt
acactgcttgtgggacaccctggtccgtcaacgcctactcacggagacattgatgtatta
gtcactgctagtccactgagtggacctaggtttgattgtatgggaagggagtcgatggat
gcggctaatgcattttacaattacaactctgtcagtggcgaaaaagacgatggagtagta
cagttgaacccagaaactccctcctcgtcaccgcaaccaaccgacaccaaagatattgaa
agttggatacgacgtaccctacgctcttctcgcttcatcgaccccaccgaactaggtatt
gaaccgggaaaattagcatggagaatccgtatttcaattcaaattattaaccatgatgga
aatgtagctgatgctgctttactttgtgcgtgtgctgcgttgggggatttgaagttgcca
atggtggaggttgatcggagggaggggggagtggtacgcattgtcaaggaggatgaagca
caagtaatgaatggagggaggaataaggatgttgaaatgagaaaaggaaggtcgttgacg
ttagggccacttcctgtgccgttgactattgcaattctacccaacatcaaaagcaagaca
tctgcatcagagagtagcatacttttggtggatccaactcgtctcgaagaagatgtgtca
tccggaaataccattactatggtgtgcaatgcaaatgaagagattgtggagtttcataag
agggggagcgaaagtcggttgagtatggatcaaatcgcggcagtggcttgtatggggttt
ggaagggcgaaggagttggaggcgttggtggttggagaacgataa
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