Thalassiosira pseudonana: THAPSDRAFT_24527
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Entry
THAPSDRAFT_24527 CDS
T01078
Name
(RefSeq) RuvB dna-helicase
KO
K04499
RuvB-like protein 1 [EC:
5.6.2.4
]
Organism
tps
Thalassiosira pseudonana
Pathway
tps03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
THAPSDRAFT_24527
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tps03036
]
THAPSDRAFT_24527
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
tps03037
]
THAPSDRAFT_24527
Enzymes [BR:
tps01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
THAPSDRAFT_24527
Chromosome and associated proteins [BR:
tps03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TIP60 complex
THAPSDRAFT_24527
Chromatin remodeling factors
SRCAP complex
THAPSDRAFT_24527
INO80 complex
THAPSDRAFT_24527
INO80 complex (yeast)
THAPSDRAFT_24527
SWR1 complex
THAPSDRAFT_24527
ASTRA complex
THAPSDRAFT_24527
Cilium and associated proteins [BR:
tps03037
]
Motile cilia and associated proteins
Dynein assembly factors
THAPSDRAFT_24527
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TIP49
TIP49_C
AAA
RuvB_N
AAA_22
AAA_16
DnaB_C
Zeta_toxin
AAA_25
AAA_5
Cdc6_lid
GvpD_P-loop
Mg_chelatase
AAA_28
bpMoxR
AAA_18
TsaE
ResIII
AAA_17
SLFN-g3_helicase
nSTAND3
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
7447583
NCBI-ProteinID:
XP_002293057
JGI:
24527
UniProt:
B8CAJ4
LinkDB
All DBs
Position
12:<715414..717122
Genome browser
AA seq
455 aa
AA seq
DB search
MKIEEVQSTSKTTRISAHTHIKGLGLSPATGIALPISSGLVGQTKAREACGLIVDLIRSR
KMAGRALLLAGAPGTGKTALALGVAQELGPKVPFCPMVGSEVFSSEVKKTEILMEHFRRA
IGLRIRESKEVYEGEVTELTVEETEDPLGGYGRSISHVVITLKSTKGSKTLKLDPSIHDG
LSKEGVTVGDVMYIEANSGAVKRVGRSDAYATEFDLEAEEYVPLPKGDVHKKKEVVQDVT
LHDLDVANARPQGGKDVLSLMAAMGKSKKTEITEKLRTEINRVVNRYIDQGVAELVPGVL
FIDEVHMLDIECFTYLNRSLESTLSPIVVFATNRGVCQIRGTDVLSPHGIPVDLLDRMLI
IRTLPYNSDEMVQILNLRASVEGIEVEESALRLLSEIGSRTSLRYAVQMLTPARIVAETA
GRTAIGEEDVKEVDTLFLDGKASGKMLAKTEGYMH
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atgaagatcgaagaagtccaatccaccagcaaaacaacccgcatctccgcacacacccac
atcaaaggcctcggcctctcccccgccaccggcatcgccctgcccatctcctccggcctc
gtaggccaaaccaaagcacgggaggcatgcggcctcatcgtcgatctcatccgcagtcga
aagatggccggtcgtgccctcctgctggcgggagcaccgggcacgggcaagacggcgttg
gcgttgggagtggcgcaggaattgggaccgaaggtgccgttttgtcccatggtggggagc
gaggtgtttagttccgaggtgaagaagacggagatattgatggagcatttcaggagagcg
atcgggttgaggattagagagtccaaggaggtgtatgagggcgaggttacggagttgact
gtggaggagacggaggatccactgggggggtatgggaggagtattagtcatgtggtgatt
acattgaagagtaccaagggatcaaagacgctcaagttggatccgtcaattcacgatggg
ctctcgaaggagggtgtgacggtaggggatgtcatgtacattgaagcaaatagcggggca
gtgaaacgagtgggaaggagtgatgcctacgctacagaatttgatttggaggcggaagag
tatgtaccacttccgaaaggagacgtgcacaagaagaaggaggtggttcaagatgtcaca
cttcatgatttggatgtggccaatgctcgccctcagggagggaaggatgtgttgtcgcta
atggctgccatgggcaagtcgaagaagacggagattacggagaagttacgaacggagatc
aatcgcgttgtcaatcggtacattgatcagggagtggcggagctcgttccaggagtacta
ttcattgacgaagtgcacatgcttgacattgaatgcttcacatacctcaatcggtcgttg
gagtcgaccctctctcccattgtggtattcgccaccaatcgtggagtatgtcaaatacgt
ggaacggacgtactctctccccacggtattccggtagatttgttggatcgtatgctcatc
attcgtacattgccgtacaatagtgatgaaatggtgcaaattctcaatctacgtgcgtcc
gtggagggaattgaggtggaagagtcggcactacgactattgagtgagattggatcacgt
acgtcgttgaggtatgcagtgcaaatgttgactcctgcgaggattgtggccgagactgcg
ggaaggacggcgattggggaggaggacgtgaaggaggtggacacgttgtttttggatggg
aaggctagtgggaagatgttggcaaagactgagggttacatgcattga
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