Thalassiosira pseudonana: THAPSDRAFT_24585
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Entry
THAPSDRAFT_24585 CDS
T01078
Name
(RefSeq) syntaxin, t-snare coiled-coil domain family
KO
K08498
syntaxin 6
Organism
tps
Thalassiosira pseudonana
Pathway
tps04130
SNARE interactions in vesicular transport
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04130 SNARE interactions in vesicular transport
THAPSDRAFT_24585
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tps04131
]
THAPSDRAFT_24585
Membrane trafficking [BR:
tps04131
]
SNARE
SNAP-25[C] (Qc)
STX6
THAPSDRAFT_24585
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STX6_10_61_N
SlyX
Sec20
Phage_GP20
LMBR1
SNARE
Motif
Other DBs
NCBI-GeneID:
7450554
NCBI-ProteinID:
XP_002293488
JGI:
24585
UniProt:
B8CAY9
LinkDB
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Position
13:complement(98415..99910)
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AA seq
418 aa
AA seq
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MSEYNKLSDNGHSNGGGGGFSSSQQQHDDDSSLQQRSNNPLIPSTMSSASSISSKLSRKS
RKVSGGELGVPLTLGDDNSNYDIDGGSGSIVGDEDAYSRVSRFSIGSSQYDTDEVGSFVG
GGIMSSPPSSSPTSTSFPPASSFSPTTTQSYIAEDDPFYMFRGDLVKKLLLVEGELDRYL
TVVRTTDTATNTHAIKETKKQLKRCIKNAESTLSDLETTVRVVETKRDKFPHISNNEISS
RRNFVSDVQMRIVRSKEAMNGEEVKGKLLKDERALTERRRGNKGKGVLKGGRDGSGLSRQ
NTINSNEALLSSSSAAAAAEEGRSETILMMQQQDDTLDDLNQAVVRVGHMADTIHEEIGS
QNNMLKSLEEDLADAEEQLGVVMGRLAKLLKTKNKCQLGLIVVLTLVVLVLFFLVLYT
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaatacaacaagctctccgataacggtcatagcaacggcggcggcggtggcttc
tcatcgtcacaacaacaacacgatgacgactcctccctgcaacaacgctccaataatcca
ctaataccatcaacaatgtcctcggcatcctccatctcttccaaactgagtcgtaaatca
cgcaaagtcagcggaggggaattgggtgttccgctgacacttggtgacgataacagcaac
tacgatatcgacggtggcagtggtagtatcgtcggtgacgaagatgcatacagtagagtc
agcagattcagcataggtagttcccaatatgatactgacgaagtaggatcgtttgtcggt
ggtggaatcatgagcagtcctccctcctcgtcgcccacgtcgacatccttcccaccggca
tcttcgttcagtccaactacaacgcagagctacatagcggaagatgatccgttctatatg
tttcgaggggacttggtcaagaagttactgttggtagagggggagctggatagatatttg
actgttgttaggactacggacacggccacgaacacacacgcaatcaaagaaacgaaaaaa
caactcaaacgatgcatcaaaaatgcagaatccaccctctctgatctcgaaaccacagtt
cgcgtcgtagaaaccaaacgtgacaaattcccacacatttccaataatgagatatcaagt
cgtagaaactttgtgagtgatgttcaaatgaggattgtgaggagtaaggaggccatgaat
ggggaggaggtcaaggggaaattgttgaaggatgagagggcgttgacggaacgaaggaga
ggcaataaggggaaaggagttcttaaagggggaagagatggaagtggattgtcgagacaa
aacacaatcaattccaacgaagcactcctctcgtcttcttcagcagcagcagcagccgaa
gaaggtcgatccgaaacaatcctaatgatgcaacaacaagacgacaccctcgacgatctc
aaccaagccgttgtccgagtaggacacatggcagacactatccatgaagagattggatca
caaaacaacatgttgaagagtttagaggaggatttggccgatgccgaggagcaattgggg
gtcgtgatggggaggttggccaagctgttaaagacgaagaataagtgtcagctggggttg
attgtggtactgacgttagttgtgctggtgttgttctttttagttctttatacttga
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