Thalassiosira pseudonana: THAPSDRAFT_2467
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Entry
THAPSDRAFT_2467 CDS
T01078
Name
(RefSeq) predicted protein
KO
K08489
syntaxin 16
Organism
tps
Thalassiosira pseudonana
Pathway
tps04130
SNARE interactions in vesicular transport
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04130 SNARE interactions in vesicular transport
THAPSDRAFT_2467
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tps04131
]
THAPSDRAFT_2467
Membrane trafficking [BR:
tps04131
]
SNARE
Syntaxin (Qa)
Stx-TGN / EE
THAPSDRAFT_2467
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SNARE
Bap31_Bap29_C
PhaP_Bmeg
DUF16
Motif
Other DBs
NCBI-GeneID:
7444643
NCBI-ProteinID:
XP_002287838
JGI:
2467
UniProt:
B8BUF8
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Position
2:complement(1072422..1073874)
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AA seq
395 aa
AA seq
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MASRDLTSAFLDRRSATNRRRRAGVSSIGGGSKRWRERLLCVWSGGCWDISQAVTPFDDA
SCVNERLRSFDIVTLEQLKQRVIHQTVLPLSPSHHCHCFYPLLLPGISKKKHDITDDHLL
MEDGYTTTLPPDWVNDVDTVNATIVDIQSLMSELASMHASRIGTVFGRDLDNMEKQIERK
TREVTGKLNATFKKWERQLVGRGEKKPQLEQMSNAAYVTSQPTLTISTNQSLSSLAMQLQ
ELSSDFRQKQRKYLGDVKAQKSGGLVESEERFGINLEDDGTLQNEFNFSTTQQLSVVDDL
QAEIQSRDKEISQIAKSIEELGSIFKELAVLVIDQGTILDRIDYNMEAVVEHTKEGIQQL
EKAEKSQKSARPMKCIVCLLCTIMVLLLILVLKHR
NT seq
1188 nt
NT seq
+upstream
nt +downstream
nt
atggcatcgagagacttgacctctgccttccttgatcggcgtagtgcgacaaatcgccgc
cgccgggcgggagttagctctatcggtggaggatccaagaggtggagagagaggctgctc
tgtgtctggtcggggggatgctgggatatctctcaggcagtgacgccgtttgacgatgcc
tcatgtgtcaacgagagattgaggagctttgacatcgtcacgctcgagcagctgaagcag
cgcgttattcaccaaacggtattgccgctatcgccatctcaccattgccattgcttctac
cctcttctactgccaggcatctctaaaaagaaacacgatattacagatgatcatcttttg
atggaggatggatatacaacgaccctccctcctgattgggtcaatgatgtcgatacagtc
aatgcaacaatcgttgatattcaaagtctcatgtcggagttagcatcaatgcatgcctcg
aggattggtacggtgtttgggagagaccttgacaacatggaaaaacaaatagagagaaag
acgagggaagtcactggaaagctgaacgctaccttcaaaaagtgggagcgtcaactcgtc
gggcggggggagaagaagccacagttggagcaaatgtccaacgcagcatatgtaacgtct
caacctacacttactatttctacaaaccaatctctctccagtttggcaatgcaactgcaa
gaactatcctcggatttccgtcaaaaacaaagaaagtacttgggagacgtcaaagcacaa
aagtcaggaggtcttgtggaaagcgaggagcgtttcggtatcaatctcgaggacgatggc
actcttcaaaacgagttcaacttttccaccacacaacaactgtctgtcgttgatgacttg
caagcagaaatccaatcacgcgacaaggagatctctcagattgcaaagagcatcgaggaa
ttgggatccatcttcaaagagttggcagtattggtcattgatcagggaacgattctcgat
aggattgattacaatatggaggcggtagtagagcataccaaggagggaattcagcagttg
gaaaaggcagagaagagccaaaagagcgcaagacctatgaagtgtatcgtttgtcttctt
tgtacaatcatggtattgttgttgattctagtcttgaagcatcgttga
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