KEGG   Thalassiosira pseudonana: THAPSDRAFT_24744
Entry
THAPSDRAFT_24744  CDS       T01078                                 
Name
(RefSeq) predicted protein
  KO
K10563  formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
Organism
tps  Thalassiosira pseudonana
Pathway
tps03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:tps00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    THAPSDRAFT_24744
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:tps03400]
    THAPSDRAFT_24744
Enzymes [BR:tps01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.23  DNA-formamidopyrimidine glycosylase
     THAPSDRAFT_24744
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     THAPSDRAFT_24744
DNA repair and recombination proteins [BR:tps03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     THAPSDRAFT_24744
SSDB
Motif
Pfam: H2TH Fapy_DNA_glyco
Other DBs
NCBI-GeneID: 7450534
NCBI-ProteinID: XP_002293658
JGI: 24744
UniProt: B8CBX4
LinkDB
Position
13:complement(1004773..1005613)
AA seq 271 aa
MPELPEVEKFRQILLPLTAAVTKSKVNSSSSSSACTITIACPSPTPPKVFPSQNDIDAIN
RGGYAVGDVLRKGKVLCIVLKKQTQSAAAERATKRRRTNGDTDSCNITGNEPTIYLSLHM
GMTGRISSPGNVPSLESLSECDEYPPPHTHMIIKSTESEACFSDPRRFGSASVFGVWCEG
GDLIPSFKDLAPDALESSAGYSCANDVSKMGRKIAEQLSNQRRGIKAVLLDQRAVVSGVG
NWVADEILYRSKLHPDQSFLNVQESQRVVGE
NT seq 816 nt   +upstreamnt  +downstreamnt
atgcctgagcttccagaggtggagaagtttcgtcagatcttgcttcctctaactgcagct
gtcacgaaatcaaaggtgaattcctcctcttcttcgtcggcatgcacaatcaccattgca
tgcccatccccaacgccacccaaagtatttccatcccaaaacgatatcgatgcgatcaac
agaggtggatacgccgtgggtgacgtgttacgtaagggaaaggtgttgtgcatcgtgttg
aagaagcaaactcaaagtgctgctgcagagagagctacaaagaggcgacgcacaaacgga
gacactgatagttgcaacatcaccggcaacgaaccaacaatctatctgtcacttcacatg
ggcatgacggggcggatatcatctcctggaaacgtgccaagtctcgaatcgttgagtgaa
tgtgatgaatatccacctcctcacacccacatgattatcaaatcgaccgaaagtgaggct
tgcttttcagatccgcgaagatttggatcggccagtgttttcggtgtgtggtgtgagggc
ggcgatttgattccatcattcaaagatctcgctcccgatgcactggaatcatcagctgga
tattcttgcgcaaatgatgtcagcaagatgggacgcaaaattgcagagcaactatcaaac
caacgtcgaggtatcaaggcagtgctacttgatcaacgtgcagtagtgagtggggtgggg
aactgggtggctgatgaaatactgtatcgttcaaagcttcatcccgatcaatctttcttg
aacgtgcaagagtctcaacgtgtagtaggtgagtga

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