Thalassiosira pseudonana: THAPSDRAFT_24828
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Entry
THAPSDRAFT_24828 CDS
T01078
Name
(RefSeq) predicted protein
KO
K04648
dynactin 1
Organism
tps
Thalassiosira pseudonana
Pathway
tps04814
Motor proteins
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09140 Cellular Processes
09142 Cell motility
04814 Motor proteins
THAPSDRAFT_24828
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tps04131
]
THAPSDRAFT_24828
03036 Chromosome and associated proteins [BR:
tps03036
]
THAPSDRAFT_24828
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
tps04812
]
THAPSDRAFT_24828
Membrane trafficking [BR:
tps04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
THAPSDRAFT_24828
Chromosome and associated proteins [BR:
tps03036
]
Eukaryotic type
Centrosome formation proteins
Microtubules and associated factors
Dynactin complex
THAPSDRAFT_24828
Cytoskeleton proteins [BR:
tps04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Dynactins
THAPSDRAFT_24828
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAP_GLY
HRI2_3H
Motif
Other DBs
NCBI-GeneID:
7452661
NCBI-ProteinID:
XP_002293919
JGI:
24828
UniProt:
B8CCB9
LinkDB
All DBs
Position
14:complement(414520..419153)
Genome browser
AA seq
1532 aa
AA seq
DB search
MSSSSDDLALNDPVHVTTTDDPSPLEGIISHLGPVAFAPGSDWIGIRLTGPSVGKGKNDG
SVKGTAYFECGGEKNGMFVKRSNVEKRTLTKLESLRLRRELEGAGSVSGAAKSGIVSPVR
TTRSTRSTSTASADSSAGGSTKSTTPKGLTDEADSKLSRIEMLRAKREALAKEREAKEKT
PAKDVVSKEKTPVKTEPKEDTPAKKSEEEEKLADDSDGGGEAEDTPEGDADTDTTNNTND
DQQDEDTTTQPKVNLQTATPGYRAELARLQSVITSLRTDLKNKEAENASLQSSLDFMSKG
AEQSTHDAVRMYAMGALALTEAKTPKGGGRRSMGVEQSPALRSLNEEMNEESGSESGSES
DDGEDDDEENANEGVVNQAAAAVSQALVQRNNELMSQLSNLTSENNNLQHQLSESEERIS
NLSLRLEQSMDNYQSEKQARADDLTKYTADKSVLSSQISSLEREYKILQDRVSDKSSFQD
HSHVTLAKLRAELTSLQRKNEELNNDKVELETTLEELVLDKEQIREEKELLEEQLDECKI
DLESTQLELEDAKGQLAEGGGGDSGVAVVEEGEGGAAEGDAGADSGGETPEDSQDLTRSL
TLQNTRLRAALIRLREQSEQERNDLQRQLKALQSDSSSKEEMQAELEALRSSHAKTLTEV
KELKEIIDQTTSLEETIETLSDKMWSLEQENAELERTIRELEESAEIAAELEEVQGEELK
MVMRDLEGRDALVRNLEEAIRMQRRREEDFQRYVGEFRSSVSTLKQEKAALLALAEGDQG
KKSQLLATSQKALAQAAQLAANAAQARQRESEAAFDRIAARSATYLSQRLETLLPSGVVS
AELAAIKGELSLAKVADKSAESLSTLELVFNKVIEKGSTGLSEFNTLSEGLHNLSDASSQ
QIAAMVHQTDFATMTIEAASDALRLMAAGNWPELLSPELSTDLGGVVAHSIAHLDLTLSE
QLKLLKQDGVLSPLRSSLADLDQSVRNTRLELFSATDETGKTVIPEKWKPPGWEALKSLS
LGRFACLGATAVISSAISPIEDSENEPPPPTLVNLAGVLESAKHSCNAMLDVCKKLSGLE
ISDTETLESLNELAGQYQSASSELFDYVKTTFTQQSVSIEDVDKCSPLLDEVLSITRKLS
ALLRKANIGEHKTSSFHQLSPEYGDAWGGITNIIAQVTSVDGDPEDVNYLMRARTVEQML
SDAVQNEPKLEVATSKIGSLEKNLASRSKEIAMQNSRIAELESLISKNANPMSPLKGRAP
GSSATSADTHKLMEDLRVLQEALDVAHQEADAQAKEIKMLKDKSRTPRGIRQGASGRVTP
KKSSIEETLSQFGQASASKAGGAASSTDLLLESISLETAVFRPALCSATQSASYWKAQAM
GSALSKLTPLNVPAKPQASSTSTDVQALFGRDEESIANKFRCMEEVALASNEVRLAKASF
SIVDLTDTDVSSRNQLNKERQKENVAESRLYDATMKYISYQSKINGSVAPVVPSSQVPLG
RITLPCRDDTGFVSTLTVSKGELREFHSFLVQ
NT seq
4599 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcgtcctccgacgacctggccctaaacgatccagtccacgtaaccaccaccgat
gatccctcccccctcgaaggaataatatcccacctcggcccagtcgccttcgcccccggc
tccgactggatcggaatacgcctcaccggtccgtccgtcggcaagggtaaaaatgatggg
agtgtcaagggcactgcgtactttgaatgcgggggtgagaagaatggaatgtttgtcaag
aggagtaatgtggagaagaggactttgaccaagttggagagtttgaggttgaggagggaa
ttggagggtgccggaagtgtcagcggtgcggcgaagagtggaatcgtttctcccgttaga
acaacgaggtctaccagatccacgagcactgcttcggctgattcttctgctggtggcagt
acgaaatcaaccactccaaaaggtctcactgatgaggccgactcaaagctgtcgcgtatc
gagatgctgcgtgccaaacgggaggcgttggccaaggagcgggaagcgaaggagaagacc
cccgcgaaagacgttgtgtcaaaggaaaagactcccgtcaaaacggaaccaaaggaggac
actcctgccaagaagtcggaagaggaggagaaactagctgatgatagtgatgggggtggt
gaggctgaagacacaccagaaggcgatgctgacactgacacaacaaacaataccaacgac
gatcaacaagacgaagacacgacaacccaacccaaagtaaaccttcaaaccgccacccca
ggctatagggctgaactcgcccgtctccaatccgtaatcacctctctcagaacagatctc
aaaaacaaggaagccgaaaatgcatcattgcaaagcagtcttgacttcatgtccaagggt
gcagagcaatccacccacgatgctgttaggatgtatgccatgggtgcattggccttgacc
gaggcaaagactccaaagggtgggggaagaaggagtatgggtgtcgaacaatcacctgcg
ttgagaagtttgaacgaagaaatgaacgaagagagcggtagtgagagtggtagtgagagc
gacgatggagaagatgatgacgaggagaatgctaacgaaggagtggtgaatcaagcagct
gccgctgtttcacaggcattggtccagcgcaataatgagctcatgtcacaattgtccaat
ctaacgtcagagaataacaatctacagcatcaactatcggaatcggaagagaggatttcc
aacctttcacttcgtctagagcaatcgatggataattatcaatccgaaaaacaagcacga
gcggatgatcttacaaagtacactgccgacaaatcagtattatcttctcaaatctcatcg
ttggaacgagaatacaagatattgcaagatcgcgtctctgacaagtcttccttccaagat
cattctcacgttacattagccaaactacgtgcggaattgacttcattgcaacgcaagaat
gaagaattgaacaatgacaaagtagagttggaaactaccttggaggaattggtattggat
aaagagcagataagggaggagaaggagttgttggaggagcagcttgatgaatgcaagatt
gatttggagagtactcagttggagttagaggacgcaaagggacagttggccgagggggga
ggtggtgacagtggtgtagctgttgtggaggagggagaaggaggggcagcagaaggagat
gctggggccgattctggaggggaaacgcctgaagactcacaggacctgacaagatcgctt
acactgcaaaatactcgtcttcgcgcggctctcattcgtctacgcgaacaatcggagcaa
gaacgtaatgatttgcaacgtcagctcaaagcattgcaatcggactcttcgtctaaagaa
gagatgcaagcggaactggaggcacttcgttcttcacacgcaaaaacattgactgaggtc
aaagaactgaaagaaattattgaccaaactacctccctcgaagaaacgattgagactttg
tcggataaaatgtggagcttggaacaggaaaatgcagaactggagagaacaatccgtgaa
ctagaagagagtgcagagattgctgccgaattggaagaggtgcagggtgaagagctgaag
atggtcatgagggatttagaagggagagatgcattggtcagaaacttggaggaggctatt
cgcatgcaacgccgccgcgaagaagactttcaacgctacgtcggtgaattccgctcgtcc
gtctccacccttaaacaagagaaggctgcactacttgccctcgcggaaggagaccaaggt
aaaaagagtcaacttcttgccacatctcaaaaggccttggctcaagctgcacaacttgct
gccaacgctgctcaggctcgtcaacgagagtctgaggcagcatttgatcgtatcgcagca
aggagtgccacttatctcagccaaaggttggaaacgctcttgccatcgggtgtggtgtcg
gcagagttggctgctataaaaggagagttgagtctagcaaaggttgccgacaagtcagct
gaatcattgtcaacgttggaattagtattcaacaaagtgattgagaagggatctactgga
ctttcagagttcaatacactgtcagaaggactacacaacttgtctgatgcgtcgtctcag
cagattgctgccatggtgcatcaaactgatttcgccaccatgacgattgaggcagcatcc
gatgcgttacgcttgatggctgcaggcaattggccagaactgctgtcaccggagttgtca
actgatttgggaggtgtcgtggcccattccattgctcatttggacttgacattgagtgaa
cagttgaagctattgaaacaggatggagtattatccccattgagatcttctttggcggat
ttggatcagtctgtgcgaaatacgaggttggagttgttcagtgccacggatgaaacggga
aagactgtgattcccgaaaagtggaagcctcccggttgggaagcattgaaatccctgtct
ttgggtcgctttgcttgtttgggggcgactgctgtgatttcttccgcgattagtccaatc
gaagactccgagaatgaacctccaccgccaacgctagtcaatcttgccggggttcttgag
agtgcaaaacatagctgcaatgcaatgttagatgtatgtaagaagctctcgggtcttgaa
atatccgacactgagacgctcgagtcgctgaatgagttggcaggccagtatcagagcgct
tcatccgagttattcgattacgtcaagacgacctttacgcagcagagtgtctctatcgaa
gatgttgacaaatgctcaccacttttggatgaggttctctctatcacccgaaagctttct
gcacttcttcgaaaggcaaatattggagaacacaagactagcagcttccaccaactgtca
ccagagtatggagatgcatggggaggcatcacaaacataattgctcaagtcacaagtgtg
gatggggatcctgaggatgtgaactatctcatgcgtgcgaggacagttgagcagatgttg
tcagatgctgtgcaaaatgaaccaaaactcgaggttgcaactagcaagattggtagcctc
gagaagaatcttgcgtctcgttccaaggaaatcgcgatgcaaaactcgcgcatcgctgaa
ctggagagccttatttcaaagaatgcaaatccaatgtcaccactgaaggggagggcacca
ggatcttctgccacatcggctgacactcacaaactaatggaggatttacgagtgctccag
gaagctttggatgttgcgcatcaagaggctgatgcgcaagcaaaagaaattaaaatgctg
aaagacaagtctcgtactcctcgtggcattcgtcaaggtgcatcgggcagggtcacacca
aagaaatcttcaatagaagaaacactgagccagttcggtcaagcttcagcttctaaagca
gggggtgcagcttcatctacagatttgctacttgaatccatctccctggagactgctgtt
ttccggccggcgttgtgttcggcgactcagtctgcttcttattggaaagcacaagccatg
ggctctgctctttcaaagctgactcctttgaacgtgcctgcaaagcctcaggcgtcgtca
acgagcactgacgtgcaggctctctttggtcgtgacgaagagtcaattgcaaacaaattt
cgttgtatggaagaagttgccttggcgagcaatgaagtccgcttagccaaggcatccttt
tctattgttgacttgacagatacagatgtttcgtcgaggaatcaactgaacaaggaaaga
caaaaggagaacgtagccgagtccagattgtacgacgcaaccatgaaatatatttcgtat
caatcaaaaatcaatggatctgttgcgccggtggtgccatcctctcaggtgccgttgggt
agaatcacactaccgtgccgagacgacactggtttcgtttcaacgttaacggtgagcaaa
ggagagcttcgtgaatttcattcgttcttggtgcaatga
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integrated database retrieval system
