Thalassiosira pseudonana: THAPSDRAFT_24849
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Entry
THAPSDRAFT_24849 CDS
T01078
Name
(RefSeq) predicted protein
KO
K14570
RNA exonuclease [EC:3.1.-.-]
Organism
tps
Thalassiosira pseudonana
Pathway
tps03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
THAPSDRAFT_24849
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tps03009
]
THAPSDRAFT_24849
Ribosome biogenesis [BR:
tps03009
]
Eukaryotic type
Pre-60S particles
RNases
THAPSDRAFT_24849
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
zf-CCCH_4
DEDDh_C
zf-CCCH
Motif
Other DBs
NCBI-GeneID:
7452678
NCBI-ProteinID:
XP_002293752
JGI:
24849
UniProt:
B8CCE8
LinkDB
All DBs
Position
14:<490310..492214
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AA seq
598 aa
AA seq
DB search
MGKGYKLTSADGDGPKQCAFFFSDKGCRNGAVCKFSHEAAPPGGGAPSTSNNKTSPSVSS
SSVMSSETESDGEIVETRAGAYSSMVAKNDDTNPFFSAVGAVVAPPPPAAVSAVHSAVAS
INNNATEPPTTEKKKKKRKKRSLSAGENPFELATETQAPNNAATAANQKGIVAPPPSVPQ
PKKQKATTTPAKETPQQSTSTPNNNATFRNLQLPIASFSLPISTAATTTPAAASKSPRPP
SPQHEPAHAAPPLPLPVASANHLKWKNAVIATRDHANYDNAFNFERTKQLEFEQGISTPH
HWITTRPYGDWCKNNPASIAIDCEMCETQDPVTGKTDTKALCRLSVINADNPTEVLLDTL
VKSEWPVSNYRTWINGIKAKDLEGVQFTLRHAQMFMNALCSEQTVVVGHAVHNDLLALRM
IHHCNADTAMLYNHSEEEGGTPSLKNLAYGVLKRDMPEVHDSVNDARVALACADHYCSKN
GKVDPVEKVFRRNNGGGRDRDPADTAVLLVHRLPPTSQPGHIADMFLAYTCIKPKNVPEI
TFSGQHGKCHVEFTSKDHAELAYASLNGEEREDKTGKKQKRVGLKNGSYVCVRKMKKT
NT seq
1797 nt
NT seq
+upstream
nt +downstream
nt
atgggaaaaggatacaagctgacctccgccgacggcgatggccccaaacaatgcgccttc
ttcttctctgacaagggatgtaggaacggtgctgtctgcaagttctcccacgaagctgct
ccacctggcggcggtgcaccatccacatccaacaacaagacatcacccagcgtgtcgagt
tcctccgtcatgagctctgagaccgagagcgatggagagattgtagaaactcgtgcaggg
gcctattcatccatggttgcaaagaacgatgatacaaacccattcttctctgctgttggt
gccgtcgtggctcctcctccgccggcagccgtgtccgctgtgcattctgcggtagccagc
atcaacaacaacgccactgagccacccactaccgagaaaaagaagaagaaacgcaagaag
cgaagtttgtctgctggtgaaaatccatttgagctcgcaactgagactcaagcccccaac
aacgctgctactgctgcaaaccaaaagggtattgtggctcctcccccctctgtacctcaa
ccaaagaagcaaaaggctacaaccacccctgcgaaagaaacgccacaacagtcgacatca
acccccaataacaacgcaacttttcgcaatcttcaacttcccattgcttctttctctcta
cccatcagtacagcagcaacgacgactcctgcggcagcttccaagtctcctcgtcctcct
tcaccacagcatgaaccggcacacgcagctccaccacttccacttcctgttgcatcggcg
aaccatctcaagtggaagaatgccgtgattgccactcgtgatcacgccaactacgacaat
gcattcaactttgaacgtaccaaacaactggagtttgagcagggaatatctactcctcac
cattggattaccactcgcccttacggagattggtgtaagaacaacccagcttctattgcc
attgattgtgaaatgtgtgagactcaggatccagtgacgggaaagacggataccaaggcg
ttgtgtcgtctatcggtaattaacgccgacaaccctacggaggtattgttggatacgctc
gtgaagtctgagtggccagtctccaactatcgtacgtggatcaatggaatcaaagccaag
gatttggagggagtgcaattcacgttgcgtcatgcgcagatgtttatgaatgcactttgt
tcggagcagacggtggtggttggacacgctgtgcacaatgatttgctggcacttcgcatg
atccatcactgcaatgctgatacggccatgttgtacaatcactcggaagaagaaggcgga
actcccagtttgaagaacttggcgtatggggtattgaaacgagatatgcccgaggttcac
gattctgtgaatgatgctcgtgtggcattggcttgtgcggatcattactgctccaagaat
ggcaaggtggatcctgtggagaaggtgtttaggaggaacaatggaggtgggagggatcgt
gatccagcagacactgcagtattgctcgtgcatcgtctaccgcccacatctcagcccggt
catattgctgacatgttcttggcctacacttgtatcaaacccaagaatgtgcctgaaatc
acattctctggtcagcatggcaagtgtcacgtcgagttcacgtcaaaggaccatgctgaa
cttgcgtatgctagtttgaatggggaggaacgcgaggataagacagggaagaagcagaaa
cgcgttggactgaagaatgggagctacgtttgtgttcgtaagatgaagaagacttga
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