Thalassiosira pseudonana: THAPSDRAFT_25135
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Entry
THAPSDRAFT_25135 CDS
T01078
Name
(RefSeq) predicted protein
KO
K20163
DENN domain-containing protein 4
Organism
tps
Thalassiosira pseudonana
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tps04131
]
THAPSDRAFT_25135
Membrane trafficking [BR:
tps04131
]
Protein recycling
Rab GTPases and associated proteins
Other Rab GTPase associated proteins
THAPSDRAFT_25135
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DENN
uDENN
dDENN
Pox_A11
Motif
Other DBs
NCBI-GeneID:
7442520
NCBI-ProteinID:
XP_002296798
JGI:
25135
UniProt:
B8LCK2
LinkDB
All DBs
Position
16
Genome browser
AA seq
1927 aa
AA seq
DB search
MAPVLNILLTLLHRLLLLLLFGSEDPSSLMGESGENILVVEFNGCECVLDRWFAVTASRV
TCVMLHKHHHHGKRYQSGKNKGVADYFAVLGIDSFLPPVDGDPKEESDGEDSFGDGGGVD
GREATSRTNVNIDIGTHTGEEGGLTTPRNSNLTRRNDGEVQLDDEGTNEGSEHKDATASQ
QPRNNRNKDEAQMHQERFQREIVYLSLSSSAELRDGWNVCSSTNVGMQNNHGESLSVYGN
SNSLTLDGGANKVHLTYQRRGALRNDSNGNNRASPIPPPKPSTLSPSAGAMTSPSSPASC
MSPTSPSNYYIPGVADVAIHYAKVRPSTVPCYQQQVEQLLIKEQYYQRRMDNIFTNSNSI
NTATNANDTNTKSIPGQIAAQAVASGAAKHITSLARRTTGLLSKSSVASRGKELMGELGF
GRNVNVADGQENGRSDSLTEQPINPQSTLTRETQQPHHLYDTGKEGSFETGLGAAHFEDA
HGDFPLWNSGSDVGAKKQRARREHFFPDTPILKPYKDAGKGDGDMDHMSYDGVVRRSLAE
MLSLPDGFDEWVVPDFCSTLYLPTPEFLKQQQSVRDQMQYNSSSRRQPILVDRTHALPST
VARNDNEALSPASLGISSPSSMGVEAMYLSPSSTSRMNDRTDRHGSIDVDTPRSSDDNTS
PLASPQFTHSVPDPTYLPTLVSWRAVPISHKNGGNNDVNADDHVYIPILAIRRQQVGEAE
RFNEDPAIVDIRLAPSDSNGFLSAIIDDDDDDDFNDRDSTPMMQHGVHPNILKKSRWIPC
ANTNAHSPSPLLKYHPFILIQRNLPNGFVDLPFPARVLDRFPTKNYRGMPFPEEELPLFC
YAGGSRLVRDKLRNLPMPRYFGFVVKNERGDSIYVSCMSFLEPITSQRKEELDQLSQERR
RTSLPHRFSYQRRLSQRDDLFSKCHLVGFDDIVTFENKTICLVGRYPYWTEFRRFLTHLH
LLSGSSSDIPLERNISHLLLSVPVPRPGGQCVLVPLSTMNEPMALLMPPLKDLPLVDLTY
QMLFSALDVPTVVTIVLGFLCLEQKVILVSTRQSLVIDCCELLKSLLFPFEICAPYVPHL
TTPFASCLQFPGATFVGIFDDGSEECLANTVRSSIPEDSIIVELDTGEINCAGNRYETLK
AAYQIIPADSRSALIKEVETLCQNAGIVPGQEPLDCGFDSVIDSTAPSNISEAFGRKNNK
QYEPLDDRAIRDSFLRFFCSILGGYERFLVVPDADFLISGNDWFDSSKFIAASVPSSTPF
LNTLVGTQLFQSFIQRRTEASDVHCMLFDECLVEYHSSKVPYGVFGDGDLLVDQCATEPD
DPLLDEVSSFMASSEVDDKQFPNDNDAATQASSGYAETTISATSVDAEASTFAINASGDI
VTMPSVSGLPLNARFMYCVNGQPSFPTSFDLDYFFPKEPEVLATDSSEVPPPILTRSERE
RDEANRMRIVADEAAYRALIVACGKCGTDRRIELMKLYGLMRTDGIFPNAVTLGQYTRAI
AEGFSRRSEESHAKSGMQIVVPTNGKKPSQKVNLEVLDSNLQSLEACPRCGSAITPQLGY
EEVLIKETYETKNDELSFVVSSTHDETNQSIEVSRLENEPNVTRDTPLQGIPPQLESNIH
DGNSSTDRNDEGRTGFVTYISPHRLRLLLEQLVFEFGEEVLDRDRLRLLNPQVFFNLWWY
SSRFSLPLPLACSASDGIDNESLCAFASWDKGVAIQGCLSAAKAIAAAQALPFSKERLLR
EKLFDNPNTDMPLLAFFNLQNYAQQDWDHEDLSEVLVTLVKACDTRDLLPVVECVFRRND
LRKEEQERSGRNNSMDLSFESAGTSTFSLGASMDLSLRPSAELDCYRTILYLARYQCQTA
FHAFFPTTTRACKGYHFWCAQGTPLPIFDRAFREAADEYSKKNNMIVPVPDASDVALGFR
CVFGHLI
NT seq
5784 nt
NT seq
+upstream
nt +downstream
nt
atggctcctgtgttgaatattttgctaacgctgctgcataggttgttgctactgttgttg
tttgggagtgaagatccatcttcgttgatgggagagagtggtgagaacatccttgtggtg
gaatttaatggatgtgaatgtgtgctcgaccgttggtttgcggttacagccagtcgtgtg
acgtgtgtcatgctgcacaaacatcatcatcacggcaagcgataccaaagtggcaaaaac
aagggagtggcagactacttcgctgtgcttggtatcgattcattcttgcctcctgtcgat
ggtgatccgaaggaggagagcgacggagaagacagctttggcgatggcggtggtgtagat
ggacgagaagcaacgtctcgaacaaacgtcaatattgatatcggtacacatacaggggag
gaggggggactgactactcctcgcaatagcaatttgacgagacgcaacgatggtgaagtg
caattagacgatgaaggtacaaatgaaggcagtgaacacaaagatgcaacggcatctcag
caaccacgaaacaaccgcaacaaagacgaagctcaaatgcatcaagaacgattccaacga
gagatcgtttatttgtctctctcttcatctgctgaattgagggacggttggaacgtctgc
tcttctacaaatgtcggtatgcaaaacaaccatggtgaaagtctatcagtttatgggaac
agcaactcattgactcttgatgggggtgcaaacaaagttcatttgacgtatcaaaggaga
ggagccttgcgaaacgatagcaacggcaacaatcgggcttctccaataccaccaccgaaa
ccttctacattgtctccatcggctggagcaatgacctcaccgtcaagtccagcatcatgc
atgtcgccaacatctccatcaaactattacattccgggagtggcagatgtcgctattcat
tatgcaaaggttagaccttcgaccgtgccgtgttatcagcagcaggtggagcagctattg
ataaaggaacaatactatcagcgaagaatggacaacattttcacaaactccaactcaatc
aacactgcaacaaacgccaatgataccaatactaaatcaataccgggtcaaatagccgct
caagcagtagcgtcaggagcagccaagcacataacatctcttgctcgtcgtactacggga
ttattgtcaaagtctagtgttgccagtagggggaaagagttaatgggagagttgggtttc
ggcaggaatgtaaatgttgccgatgggcaagagaatggtcggagcgatagccttacagag
caaccaatcaatccacaatccacactcacgagagaaacacaacaaccgcaccatttgtat
gatacaggaaaagagggatcctttgaaacaggtcttggtgccgcacactttgaggatgct
catggtgatttccccctttggaatagtggatcagacgtgggagcaaagaagcaacgggcg
aggagagagcatttctttccagatacaccaattctaaaaccatacaaggatgctggaaag
ggtgatggggatatggaccacatgtcgtatgatggagtcgttcgcagatcattggcagag
atgttatctctccctgacggatttgatgaatgggttgtaccggacttttgcagtacgttg
tatttgcctactcccgagtttctgaaacagcagcaaagtgtgagagatcaaatgcaatac
aactcctcgtcacgacgtcaaccaatccttgtggatagaacccatgccttgccgtcaaca
gttgctaggaatgataacgaagctttatcgcctgcgtctttggggatatctagtccatca
tcaatgggggtggaagcaatgtatctcagcccttcttctacttcgcgaatgaatgataga
acggataggcatggttcaatagacgtggatacgccacgttcatcggatgataatacgtct
ccattagcttcgccacaatttacacactcagtgcctgatcccacttatttaccaacgctg
gtgtcttggagagcagtaccgatttctcacaaaaatggaggtaacaatgatgtcaatgca
gatgatcatgtatacattccaatcctcgccattcggagacagcaagtgggagaggcagaa
aggtttaacgaagatccggcaatcgttgatattcgattggcaccttcagattccaacggg
tttctatcggcaattatcgatgacgatgacgacgatgacttcaatgacagagattcaacg
ccaatgatgcagcatggagtgcatccgaacattctcaaaaagtctcgatggattccttgt
gccaataccaatgcacactccccttcgcccctcctgaagtatcatccttttattctcatc
caacgcaatcttcctaatggatttgtcgaccttccatttccagctcgagtgttggatcga
tttcctactaagaattaccgaggcatgccgtttcctgaggaggagttgccgctattctgc
tatgcaggaggcagtcgtcttgtgagggataagttaaggaatctaccaatgcctcggtac
tttggctttgtggtgaagaacgagagaggagatagcatttatgtatcatgcatgtcattt
ctggagccaataacctcgcaaaggaaggaggagctagatcaactgtcacaggaacgacgt
agaacgtcattgccacacagattctcctatcaacgaaggctgtcgcaacgtgacgatcta
tttagcaaatgtcacctagttggcttcgatgatattgttacctttgagaacaagacgatc
tgcctcgtgggacgatatccgtattggacagagtttcgccgattcctcactcatctccac
cttctgtctggttcatcgtcggatattccactggagagaaacatatcgcatcttctttta
tctgtcccagttccaagacctggaggtcaatgtgtcttggttccactgtcaacgatgaat
gagccaatggccttgcttatgccaccattgaaggatcttccgctagttgatttgacgtat
cagatgctcttctctgctttggatgtgcctacggttgtaacaatcgtccttggatttctc
tgccttgaacaaaaggtcatactcgtttccactcgacaatcgttggtgatagactgttgc
gagttgctcaaatcactcctcttcccctttgagatatgcgctccctacgtcccacacctt
acaactcctttcgcgagctgtcttcagtttcctggagcgacgtttgttggtattttcgat
gatggctcggaggagtgtctcgctaacactgtccgaagtagcattccggaagatagtatc
attgtggagcttgatacaggtgaaatcaattgtgccgggaatcgctatgaaacgttaaag
gcagcgtaccaaatcattccagctgattctcgctcggctctaatcaaagaggtagagacc
ctttgtcagaacgcaggtatcgtgcctggtcaagaacctctggactgcggttttgactcg
gtcattgactccactgctccttctaacatatctgaggcgtttggacggaagaacaataaa
caatacgagcctttggatgatagagcaatacgagatagctttcttcgcttcttttgctct
attcttggtggatatgaacgattcctcgttgtaccagatgcggactttttaatcagcggc
aatgattggtttgactcatcaaagttcattgctgccagtgttccgtcttccacacccttt
ttgaacactctcgtcggtacacaactgtttcaatcattcattcaaaggcgtactgaagca
agtgatgttcattgcatgttatttgatgagtgcttggtagaatatcacagttccaaagtg
ccttacggagtgtttggagatggcgatttgttagtagatcaatgtgcaacagaaccagat
gatcctcttcttgacgaagttagttctttcatggcatcgtcggaggtagatgataaacaa
ttccccaatgacaacgatgctgcgactcaagcgtcttcgggctatgcagagacaacaatt
agcgcaacgtcggttgatgcagaggcttctacttttgccatcaatgccagtggagatatt
gtgacgatgccttcggtttctggcctgccattgaatgctaggttcatgtactgtgtcaac
gggcagccttctttccccactagctttgacctcgactacttctttcccaaagagcccgaa
gtgttggcgactgattcatcagaagtgccacctccaatcttgacaagatctgaacgtgaa
agagacgaagccaatagaatgcgcattgtggcagacgaagctgcttatcgcgcactcatt
gtagcttgcgggaagtgtggaacagatcgtcgtattgagttgatgaagctttatggattg
atgagaacagacgggatatttcccaatgcagttacactcggtcagtatacccgagcgatc
gcagaaggcttttctcgaaggtcggaggagagtcatgccaaatcaggaatgcagatcgtt
gtaccaacaaacggaaagaagccatcgcaaaaggtaaacctggaagttttggatagtaac
ttgcaatcattggaagcatgtccacgttgtggatcagcaatcacaccccagcttggttat
gaggaggttctaatcaaagaaacatatgaaacgaagaatgatgaactttctttcgttgta
tcatccacgcatgatgaaacaaaccaatccattgaggtatcaagattggagaatgagccc
aacgtgacacgagacactccacttcaaggcattccaccccagcttgaaagcaatattcat
gatggaaattcgtctactgaccgaaatgacgaaggaaggactggatttgtgacatacatt
tcaccgcacagacttcgactattgcttgagcaattggtattcgagtttggagaggaagtt
cttgatcgtgaccgtctacgcttgttgaatccccaagtcttcttcaacttgtggtggtac
tcttcacgtttctctttaccacttcctcttgcctgctcagcttctgatggaatagacaat
gaatcactctgtgcatttgcgagctgggacaaaggtgtggcaatacaaggttgtctgtca
gcagcaaaagccattgctgctgctcaagcccttcccttctccaaagaacgactccttcgt
gagaagctatttgacaacccaaatacagacatgcctctacttgcattcttcaatcttcaa
aactatgcccaacaagactgggatcacgaagatttatctgaagtattggtgactttggtc
aaagcttgtgacacccgtgacttgcttcccgtcgttgagtgtgtcttccgtaggaacgat
cttcgtaaggaggagcaggaacgaagtggacgcaacaactcaatggatttatcctttgag
tctgccggcaccagtacattctcgcttggggcatcaatggatctatctctacggccgtct
gccgagctagactgctatcgcacaatattgtacctcgctcgttatcaatgccagactgct
ttccatgcattctttccgactaccacaagagcatgcaaaggttatcacttctggtgtgcc
cagggtactccgctgccaatctttgaccgtgcatttcgagaggctgccgacgaatacagc
aagaagaataacatgattgttcccgttccagatgcttcagatgtggctcttggctttaga
tgtgtgtttggtcatctcatttga
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